FastQCFastQC Report
Sat 31 Dec 2022
SRR5843905.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843905.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219414
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT12050.5491901154894401No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC10870.4954105025203497No Hit
GGTCTCGGGAGCCACAGATGTGGTTAACAATGATTCATTTGCATTTTATTAT2340.10664770707429791No Hit
TAAGCTGGGCGATCTACTTTTGGGCAGATGAAATGACAGTTTGCTAATGATG2330.10619194764235645No Hit
GTTTTCGGGACGTGCTGAGCTCGCGGGTGCGCACGGGCCGCAGCATCCGTGG2270.1034573910507078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)