FastQCFastQC Report
Sat 31 Dec 2022
SRR5843903.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843903.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences221577
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT11900.5370593518280327No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC10670.4815481751264798No Hit
GGTCTCGGGAGCCACAGATGTGGTTAACAATGATTCATTTGCATTTTATTAT2340.10560662884685686No Hit
GTTTTCGGGACGTGCTGAGCTCGCGGGTGCGCACGGGCCGCAGCATCCGTGG2340.10560662884685686No Hit
TAAGCTGGGCGATCTACTTTTGGGCAGATGAAATGACAGTTTGCTAATGATG2240.10109352504998263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)