FastQCFastQC Report
Sat 31 Dec 2022
SRR5843869.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843869.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117530
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGTATTCAATCTCGTATGC6040.5139113417850761No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTATTCAATCTCGTATGCCGTCT3860.3284267846507275No Hit
TACATAGGGGCTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGTCTATTA1790.15230154003233218No Hit
GCCGATGGGGGCGGAAGAGGTGGCCCCGGATGCTGCGGCGCCCGCTGGCCGG1770.15059984684761338No Hit
TAAAACGGGTGCCACAGGCAGCACAGCAAGCAGGTTACCAGCCAGTCTTGTC1750.14889815366289458No Hit
AAAATGAGGAATCTTTTTGTTTCTCTTTAATTTTTTCATTGACCATGTTGTT1710.14549476729345698No Hit
GTTAATGGGTACATATGGCGAATAGCACATGGAAAAATGTTCAATATCATTA1690.1437930741087382No Hit
GACCACAAAGCCCATGGTAACTTCTGCTTGTAATGGAACACGGAATGTGGCC1680.14294222751637878No Hit
TATCACGGGGGATCTTACAGAAGGGCAATGAAAATAATCCTTCAAGAATTAA1680.14294222751637878No Hit
TACAATGGGATACACAGTATGTTCTCTGACCACAATAGAATGAAATTAGAGT1680.14294222751637878No Hit
ACTATGGGGACAAGAAGAAGTCTGGAAAGTATACAAACACATTGAAATCAAA1660.14124053433166No Hit
ACAACGAGGGAGGTGAGCGGGGGCCACAGCCCGGGCTGGGGGGAGCCGGGGT1600.13613545477750363No Hit
CTATCAGCGGGTTTCTGGAATTCCTGTTTTCCAGATGTTAGACCTCCAGAAT1590.13528460818514423No Hit
GACAGAGGGGTCAAATTACAGCTTCTTGTGTTCACCACGGAAGTAAATGATC1570.13358291500042543No Hit
TAACTAGGGATCTCTCTTTTTTTAAGTTATTTGAATTGGGATTCAAATTCAG1570.13358291500042543No Hit
CTGTATACGGGGGGAGGGGGCGGGGCTTCGGCCGGCTAAGCCGCGGCCACCC1570.13358291500042543No Hit
TTAAGAGGGATGATCAGTGGATAAAATCACAGAAAATTGTCAAATTTCCTCG1560.13273206840806603No Hit
GAATGTGGGGAATTATAATTTAAACTGTTTAATTTTGTTTAATGTGTATATT1550.13188122181570663No Hit
CCTCAAGGGTGCATTTTTGCTTTTCATTATCTTTTTTTTTTTTTTTTTTTTT1550.13188122181570663No Hit
GAGCCAGGGTATTCTGCTGGAAGCCCATGAACCATCGCTGAGGTTCTGATAC1550.13188122181570663No Hit
TGGTAGGGGCTGCTCTAAAATTGGTGTTTGGGTGATCAGAAGCAGGTAGCCA1550.13188122181570663No Hit
TCCAGAGTGGGTAAAAACTCAAAGTAATAGTCTCAAATTCAAAGAAACATTT1530.13017952863098783No Hit
CAATGAGGGACTGAAAGTCCACTCCTACTCATCACAGGGCCTTTGCACATGC1530.13017952863098783No Hit
AACAACGGGGCCGGCCGGGGGCGGACTGGGAAGCCGGCAGAAATGGAACGAT1520.12932868203862843No Hit
AGTCATGGGGGGCGCCGGGCGCGTCTTAGGGTGGCGCGGCGGGAATGGTTGG1520.12932868203862843No Hit
TCCTGCGGGACACTAATGGAAGAAATTAAAAAGGACACAAAACAGTGGAAAC1510.12847783544626903No Hit
GCCCAAGGGCATGGAAGAAGGTCCCAGAAAGGTTCCCAGGAGATAGGTGTCT1500.12762698885390966No Hit
GACAGTGGGATAAACTTAAAGTAAAGGGGTGGAAAAGACTTTCCATGCAAAT1490.12677614226155023No Hit
CCTTCAGGGCCACTTTTACTAAATTTGCTCTTTCAGTCTACTCATTTGTTAT1490.12677614226155023No Hit
ATACACGGGAAACTACCATCAGAGAATACTATAAACACACTGTGCGAATAAA1490.12677614226155023No Hit
GATGCTGGGGTGAAAAGAGGCAGGAAGAGAAGTGTCAGGGAGTCAAAGATAG1490.12677614226155023No Hit
AGCACTGGGACTATGAAATTTGAGATTTAACATTTATTCATTAGTCAGATTT1490.12677614226155023No Hit
GTATTAGGGAAGTAGAAGAGCAGCGTGAACAGGAAGCTAAGCATGAACGCAT1470.12507444907683143No Hit
TGGCTAGGGAAATTCAAACAAGACTCTTTCCAATTTAAAGGGCCAAACCCTA1470.12507444907683143No Hit
GGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGA1460.12422360248447205No Hit
AAGCAGGGAGTACCCTTCTGGCAAACAAATAACTGAATTGCTACTATTTAAC1460.12422360248447205No Hit
TACGCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1450.12337275589211266No Hit
CATCAACCCCTTACTATAAAATGAATAAATAACCTGCATTTTGTATAGAAGT1450.12337275589211266No Hit
TACTAAGGGGATGGAAGGCGACGCACAAAAGCTTGAAGTAGAAAATGCCATG1450.12337275589211266No Hit
CACTGGGGGATGAGACTCAACTAGAAAACACCTGGTCAAACTTAAGCATAAC1440.12252190929975325No Hit
CAACTTGGGTATTTCAAACAATTGGCTCACATAATTATGGAGGCCAACAAGT1440.12252190929975325No Hit
TGTAGAGGGACTCTATCAAGACACAGGATATTCATGTCACTCCAGAAAGTTC1430.12167106270739385No Hit
TGGATGGGGAGAAGGGAAGAATTTAAAAAATGAGATAATTCCGGTGTCATTG1430.12167106270739385No Hit
GCCAATGGGGATCCTGGCTTTTAAGAAATTATTATTCCTGCTCTGCTGAGAA1420.12082021611503446No Hit
TCGCGCGGGTATGCTGTAGGGGACAGAGATTTCTGTCTTGATTTCAGGCATG1410.11996936952267506No Hit
TGCCTCGGGGCGGCACTACAGAGCTCCCGAGGTCATTTTGGCTTTAGGTTGG1410.11996936952267506No Hit
AACCACGGGACTGGGGAGTCTCTTTTCATGTAGGTTCTCCTTGATCATTTAC1400.11911852293031568No Hit
ATAACGGGGCCATGTAAAAATCCTTTGATATTGCCAGGAAACAACTTTAAAT1400.11911852293031568No Hit
CTAACAGGGGTTAATTTATTATTGACAAAAGAAAAATACTTTTTACAAATAT1400.11911852293031568No Hit
CATGTGGGGAGAGGTTATGCATTTTCCTTTAGTTATTTTATTTTGCTATACT1400.11911852293031568No Hit
TCATATGGGATCAGAAGAATGTCAATTGGCAAGAAAATCTAGTGGAACAGGC1390.11826767633795626No Hit
TCGACAGGGAACTTATTTTTCATAAAGTAATCACATGTTGATAGAAGCTTTT1390.11826767633795626No Hit
CGGGTTGGGATACATTATAGCACTAAATGTGCCCCTGTTTTGAATTGTAAGA1390.11826767633795626No Hit
TATTAAGGGGTTTTGAGTGAGTTTCTTAATCTCGAGTTCTAATTTGATTGTA1390.11826767633795626No Hit
CTATCAGGGCTAGTAAAATCATGAAACTCTTGATACAGTTTTATTTGCATTT1380.11741682974559686No Hit
TGCCAAGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTA1380.11741682974559686No Hit
GTAATCGGGACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGC1380.11741682974559686No Hit
GCCACTGGGACAGCCTTCCACTAACATCCCGTAGGAGCCTCTCTCCCTACTG1370.11656598315323748No Hit
GAAGCAGAAGAAAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAAATG1370.11656598315323748No Hit
AGTCACGGGCACGGAAAAACAAAGGGCAAGATGGAAATAAGGGATGAGAAGG1370.11656598315323748No Hit
TGGTACGGGGATCTTCTTGCGGGAACCCAAACCCAGCAGAAGAAAAGAAATA1370.11656598315323748No Hit
TCAGCTGGGAGAACTCCTGGGAAATTAGTTGTGAAAAGATTATCACCTAGGC1370.11656598315323748No Hit
TAACTGGGGCTGGCTATCTGAGTATTCATCTCAATGCCCTGCATATAGTATG1370.11656598315323748No Hit
TAATGCGGGGCACGCGGCCATGGCCGACTCCGAGCTGCAGCTGGTTGAGCAG1370.11656598315323748No Hit
CTTGCGGGGCAATGAAACTTGCAGAGGAACATTTCATGCCTTTAATTAGTTC1370.11656598315323748No Hit
AATACGGGGTAACAGAATTTACAGGACATTTTACTCAAGAGCTTCAGAATAT1370.11656598315323748No Hit
CGAAAGGGGAAACCTACCACACTGCAAGTCATAAAAAAGTCTAACACATGCA1370.11656598315323748No Hit
TAATTAGGGATGGAGAAACTAGTCATGGGCCAAAGGTCAAGATACTTCTCTG1360.11571513656087808No Hit
GTTCGTGGGGATGCCCTTCTGAGTTGCTGCTATGCCAGTGAAATGGAGAGAT1350.11486428996851866No Hit
AGAGTAGGGGTCAGTTCCTATGGGGAGCGCTTTAGAACTTTCTCTCCTTGTG1350.11486428996851866No Hit
GGTTATGGGGAGATGTGGGATCTCTGGATTTGAGGCTGTACAAGTGGTACAG1350.11486428996851866No Hit
TGTCATGGGGATCTTAGCGAGGGGTTTAAAAATGTGATTCAGCATGATTCCA1350.11486428996851866No Hit
TTAGGACGGGCAAACATTTAAAGAAAAATTAATATCGATCCTACACAAACTG1350.11486428996851866No Hit
TGTACTGGGGTTCACCAATCCTACTTTTGTTGCTCTTTTCTGCCTTGTTTTC1340.11401344337615928No Hit
CTCTTTGCAGGGAAGTCAAATTATCTGTTAAAAACAAACTATAAATAAATAA1340.11401344337615928No Hit
CTGCTTGGGGAGATGTGCATAAACAGAGAAGCTCAAAGGGAGGCAGAGAAAC1330.11316259678379988No Hit
AGCAATGGGGTATTTTGGATCAGTATTCTTTTCATTCTCTATGTAAGTGACA1330.11316259678379988No Hit
GCTACTAGGTTTTGAACCAAGTAGCAGGCAGAAACTAAAAGGGCATTGAAAA1320.11231175019144049No Hit
ATAGATGGGTAGTTTAGCTGGCCCTCCTTGTTTGCACAGCTCTCCGATGAAT1320.11231175019144049No Hit
TTTTAGGGACACTGGGCCCACATTAGAATGGGATAACTATGATTTAAGGGAA1320.11231175019144049No Hit
TGGTTGGGGAGGGATATAGTGGGAAAAAAATGCTTGAATAGGAGTCTAAAGA1320.11231175019144049No Hit
GAAATAGGGAGATGTAATTCAATTTGACTAGTGTTTATTAAGTTCCTAATAC1320.11231175019144049No Hit
TAGCCAGGGAATCACACATCTGAGAAATTACTTTCACAAAACGCTCTACAAA1310.11146090359908109No Hit
GAAAAAGGGAGCTCATTTTATTTATTCATTAAAAAATTATCTTATTCATCTT1310.11146090359908109No Hit
AAGTTTGGGAACTATACAGCTTGTCAGTGGAGGTTCCAAGATTCTTACCACT1310.11146090359908109No Hit
TCTCCGGGGTAAATGGGAAATGTCGATTTTCAATAATAGACTTATATGCAGG1310.11146090359908109No Hit
GATCCTGGGCAGAATGTGGAGCACTGAGCAGGACAGCTGACCTGTCTCCTTC1310.11146090359908109No Hit
CTAGCTGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACT1310.11146090359908109No Hit
CATTCTGGGGGACAGAGAATTTCTGTTGTTAGGAATAATGACAGTATTCTCC1310.11146090359908109No Hit
AGTCTGGGGGTGCTGGTGGCGTTCAAGATGTCGACCAAGAATTTCCGAGTCA1310.11146090359908109No Hit
TTCCAAGGGCTGGACTTCTAGAAACAAGTGAAGTGTGCTAAAGTCTCCTATT1300.11061005700672168No Hit
GCTAAGGGGGATGGTAGAAAGTGAATACACTGCATATAAAACATTTTGAAAT1300.11061005700672168No Hit
GCGCATGGGATAAAGAGAAATTCTTAAAGAAGCTAGATAAAGAAAGGCAGCC1300.11061005700672168No Hit
TTTGCTGGGAATCTCTGCTTTTCTAAAAGCACTTTGGTCAAGTCACTTAACC1300.11061005700672168No Hit
TAGCTGAGGGTCCATAAATCCACATTAAATACACATCCAGACTTCTTGAGGT1300.11061005700672168No Hit
TAATCTGGGTTCCTACTTGTACGGACTTTGAAGTGATTCAGTTTCCTCTACG1290.10975921041436229No Hit
GTTACAGGGAAGGTAAATTAAATATTTTTACAGTTTCTTACTATAGAGCTTG1280.10890836382200289No Hit
GCACATGTACACCTCAACTTAAAGTTTAAGAAAAAAAGAATGCTGGTGGGAA1280.10890836382200289No Hit
TCGAAAGGGTGTAACATTTGGAAGATTTTGTTATGGTGTCACTGTCATTTTG1280.10890836382200289No Hit
CAGCTCGGGGTCATAAGCTCCTTGTGAACCCAAACATCCCATCTCGACACAT1280.10890836382200289No Hit
TATTATGGGCCTCATCTCAAAAAAATAAAAAGGATGTACTTCAGAAGGATGG1270.1080575172296435No Hit
ACTGCAGGGTAGGTTATTTTATGTAAGTAGAAGTCATAAGACTATCACATAA1270.1080575172296435No Hit
TTCTCCGGGCTTTCCAGGGGTAGGAAAAAGGAGAGGGAAGGTCAATAAGCCC1260.1072066706372841No Hit
GGAATAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1260.1072066706372841No Hit
AGCATTGGGATGGTGGACGCAGACCTTGAGAACAACCTAAATTATGGGGAGA1260.1072066706372841No Hit
CTTAACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1250.10635582404492469No Hit
ATGTTAGGGGTCTAAGATACAGGAATGTGACCAAGGTTTTACAATCCACCAT1250.10635582404492469No Hit
TTAGCTGGGGAGCCGTGCTTATATAAAGCTTCAGGAAGCGCCGTTCCGACGA1250.10635582404492469No Hit
TTTCCCAGGAGAAATGCAATTGTCTTAAAACTCCCTCCCTAACAATCTCATT1240.1055049774525653No Hit
TGAATCGGGTCTAGTTGAGGACTGAGCAGCGAACGTGCGTCGTCTGTCTGGC1240.1055049774525653No Hit
ACTTCTGGGATGCTTCCCGAAGAAGTCTATTTAATACATAAACTTTTATATT1240.1055049774525653No Hit
AAACTAGGGTGCTCAAACTATGACATTTGCTTCTATTGTTTCCCTTGTCGTT1240.1055049774525653No Hit
GACAATGGGATTTAAATGTATTAAGGTTTTGATGAGTTTAGGAAAATACTGA1240.1055049774525653No Hit
GGATTTGGGCGATCTTTGGCAGGGGTGTGTGTAGACCATGGTGTTTCTCTAT1240.1055049774525653No Hit
GGTTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1240.1055049774525653No Hit
ATTGTAGGGTGCTTCTCGGAGGAAAATCTTAATCTAGACAGATTCAGATTCC1240.1055049774525653No Hit
GGTTCTGGGGAAAAACCAACAGTATAGAAAATGAGAGAAAAATAGCAAGCAC1230.1046541308602059No Hit
TGAAATGGGGAAGTATTAAAAGCTTAATCTTGATTCCGCCACATCTCCCTAG1230.1046541308602059No Hit
GCTAGGGGATTTTGGTGCAGTGAGAATTTATAGAAGTAACCAGCTTGATGGA1230.1046541308602059No Hit
CGTATAGGGACCAGTTGAGGCTGAGGACCTCTTCGTCTTCCTTTAAATGTCT1230.1046541308602059No Hit
TACAGCAGAATTTTAAAAAAAATAGATGTCTCTATCTTCATTCCTACATTTC1230.1046541308602059No Hit
AGGTTCGGGCTCCACGATCCCTCATTTTCTCTCTTTGCAGATAATTTCAAAT1220.10380328426784652No Hit
GCCGATGGGATAACCAAGCATAATATAGCAAGGACTAACCCCTATACCTTCT1220.10380328426784652No Hit
TTTTCCGGGACATGAAAGGAGTGGGACTGATGCTGGACAGGGCAGCACAATG1220.10380328426784652No Hit
GTTGCAGGGGTTTCTAAGAAACTGTATGACCAGAAATGAATTGTCTTTGATT1220.10380328426784652No Hit
TCACATGGGATCAAAGGAGAATTTTTAAAGCCTTAACAATGCCTACTTTCCA1220.10380328426784652No Hit
TACCATGCCAGAGGAAGAAAAGGAAATGTGCAGAAGAAAAGGAAATGTGCAA1210.10295243767548712No Hit
GTGTGAGGGAAGATGGGTAACTAGCTTTTTAATTCATGCTTTTGCCAAGAAC1210.10295243767548712No Hit
GGTTAAGGGTTATTTTTGTTCTTCAGTTTCATACATATTTTGACTAGAACAT1200.1021015910831277No Hit
ATAACAGGGGTGATTGTCTGGGGGGATTCCTGGGTTTCCCTGGGTACCTTGT1200.1021015910831277No Hit
AAAGTAGGGTATAAATACCATTAAGAGTTAGATACAAGGAGGTTGAGAAGCC1200.1021015910831277No Hit
GAGGACGGGATGTTAATCAACTTGGTGATGCCCATGACTGGAACCAGAACAG1200.1021015910831277No Hit
CCAGGCGGAGGGGCTTGGAGCAGAGACGGCAGCCCCATCCTTCCCGCAGCAC1200.1021015910831277No Hit
TTTCCTCTACCTCCTTCTCCTATTTCACCTGATACTAGAATTCCTCCTTTCT1200.1021015910831277No Hit
CCGATAGGGGACTGAAAACTATACAATGCTATTGAAAGAAACCAAAGATCAA1200.1021015910831277No Hit
GACACAGGGACTGGAAAGCAACATTAGAGTTGTCCTCAGATGAAAAGGAGTT1190.10125074449076832No Hit
TCTATACATGGGAAGTGTAAAGCATTATTATATATCAACATAATTGACCATT1190.10125074449076832No Hit
TGCTATGGGGACAGTTATTGGGAGTCTAGCAAGATGTCTTTCATTCTGTTCC1190.10125074449076832No Hit
CAGGCTGGGGATTTTGTGGAAGTTCTGATTTATGGCTGAAAGAGTTGCACCA1190.10125074449076832No Hit
GCCCGCCTTGGCCTCCCAGGTGTTGGGATTGCAGGCGTAAGCCACCGCGCCT1180.10039989789840892No Hit
TAGCCCTGGGTGGTACTCAAAAGAATGAAAGGTGGTCCCTACATTTTCTGTA1180.10039989789840892No Hit
GCATATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1180.10039989789840892No Hit
CCACAAGGGGTGGTTTTTTACAGGAGTTAAAGTACATAAATGCCTTTTTACA1180.10039989789840892No Hit
CAAAAGGGGAGATGTCGATGACTGCAAGTAATAATACAGTTTATAATGAAAC1180.10039989789840892No Hit
TTTAAGGGGATGCCTGTGTGTCTGTGTATACTTGATTCTAAGGAATGAATGA1180.10039989789840892No Hit
GTGGCCGGGAAGGAGATGGACTGTGTGAAAAGAGATGAGAAAGCAGGCCTGT1180.10039989789840892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)