FastQCFastQC Report
Sat 31 Dec 2022
SRR5843867.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843867.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117720
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGTATTCAATCTCGTATGC5800.49269452939177705No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTATTCAATCTCGTATGCCGTCT3940.33469249065579343No Hit
TATCACGGGGGATCTTACAGAAGGGCAATGAAAATAATCCTTCAAGAATTAA1840.1563030920829086No Hit
GACAGTGGGATAAACTTAAAGTAAAGGGGTGGAAAAGACTTTCCATGCAAAT1810.15375467210329596No Hit
TCCTGCGGGACACTAATGGAAGAAATTAAAAAGGACACAAAACAGTGGAAAC1810.15375467210329596No Hit
GACCACAAAGCCCATGGTAACTTCTGCTTGTAATGGAACACGGAATGTGGCC1700.14441046551138292No Hit
CCTCAAGGGTGCATTTTTGCTTTTCATTATCTTTTTTTTTTTTTTTTTTTTT1680.14271151885830785No Hit
GCGCATGGGATAAAGAGAAATTCTTAAAGAAGCTAGATAAAGAAAGGCAGCC1680.14271151885830785No Hit
GTTAATGGGTACATATGGCGAATAGCACATGGAAAAATGTTCAATATCATTA1680.14271151885830785No Hit
TACAATGGGATACACAGTATGTTCTCTGACCACAATAGAATGAAATTAGAGT1680.14271151885830785No Hit
CTATCAGCGGGTTTCTGGAATTCCTGTTTTCCAGATGTTAGACCTCCAGAAT1660.14101257220523275No Hit
CTGTATACGGGGGGAGGGGGCGGGGCTTCGGCCGGCTAAGCCGCGGCCACCC1630.1384641522256201No Hit
GGTTAAGGGTTATTTTTGTTCTTCAGTTTCATACATATTTTGACTAGAACAT1610.13676520557254504No Hit
AACAACGGGGCCGGCCGGGGGCGGACTGGGAAGCCGGCAGAAATGGAACGAT1610.13676520557254504No Hit
TACATAGGGGCTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGTCTATTA1570.13336731226639484No Hit
ACTATGGGGACAAGAAGAAGTCTGGAAAGTATACAAACACATTGAAATCAAA1570.13336731226639484No Hit
AAAATGAGGAATCTTTTTGTTTCTCTTTAATTTTTTCATTGACCATGTTGTT1550.13166836561331974No Hit
GCCGATGGGGGCGGAAGAGGTGGCCCCGGATGCTGCGGCGCCCGCTGGCCGG1540.1308188922867822No Hit
CACTGGGGGATGAGACTCAACTAGAAAACACCTGGTCAAACTTAAGCATAAC1530.12996941896024464No Hit
AGCTTAGGGACTGCTTTAAGTTTCATATTCAAAACAGTTTTTGTTTTTCTCT1520.1291199456337071No Hit
CAACTTGGGTATTTCAAACAATTGGCTCACATAATTATGGAGGCCAACAAGT1520.1291199456337071No Hit
ACAACGAGGGAGGTGAGCGGGGGCCACAGCCCGGGCTGGGGGGAGCCGGGGT1520.1291199456337071No Hit
AGCACTGGGACTATGAAATTTGAGATTTAACATTTATTCATTAGTCAGATTT1520.1291199456337071No Hit
AGCAATGGGGTATTTTGGATCAGTATTCTTTTCATTCTCTATGTAAGTGACA1510.12827047230716956No Hit
CTAACAGGGGTTAATTTATTATTGACAAAAGAAAAATACTTTTTACAAATAT1510.12827047230716956No Hit
TCTCCGGGGTAAATGGGAAATGTCGATTTTCAATAATAGACTTATATGCAGG1500.127420998980632No Hit
AGTCATGGGGGGCGCCGGGCGCGTCTTAGGGTGGCGCGGCGGGAATGGTTGG1500.127420998980632No Hit
GCTGGCTCTATTTTTACATTCCCTTCCACCTCTATACTGTCATGTCACCGTT1500.127420998980632No Hit
GATCCTGGGCAGAATGTGGAGCACTGAGCAGGACAGCTGACCTGTCTCCTTC1490.12657152565409446No Hit
AAACTAGGGTCTGCCTTGTAAAGTTCTATCACGGCCTACCTGGAATTTAAAA1490.12657152565409446No Hit
TAACTAGGGATCTCTCTTTTTTTAAGTTATTTGAATTGGGATTCAAATTCAG1470.12487257900101938No Hit
GCCACTGGGACAGCCTTCCACTAACATCCCGTAGGAGCCTCTCTCCCTACTG1460.12402310567448181No Hit
TCGCGCGGGTATGCTGTAGGGGACAGAGATTTCTGTCTTGATTTCAGGCATG1460.12402310567448181No Hit
TCATATGGGATCAGAAGAATGTCAATTGGCAAGAAAATCTAGTGGAACAGGC1460.12402310567448181No Hit
TAAAACGGGTGCCACAGGCAGCACAGCAAGCAGGTTACCAGCCAGTCTTGTC1450.12317363234794426No Hit
TGGTTGGGGAGGGATATAGTGGGAAAAAAATGCTTGAATAGGAGTCTAAAGA1450.12317363234794426No Hit
AGTCACGGGCACGGAAAAACAAAGGGCAAGATGGAAATAAGGGATGAGAAGG1440.12232415902140673No Hit
GCCCGCCTTGGCCTCCCAGGTGTTGGGATTGCAGGCGTAAGCCACCGCGCCT1440.12232415902140673No Hit
AATCCGGGGGTAGTGACATAGGCGTTTGTGTCACTCCTCCCTCACCTCCAGG1440.12232415902140673No Hit
TGGTAGGGGCTGCTCTAAAATTGGTGTTTGGGTGATCAGAAGCAGGTAGCCA1440.12232415902140673No Hit
GTTACAGGGAAGGTAAATTAAATATTTTTACAGTTTCTTACTATAGAGCTTG1430.12147468569486918No Hit
AGTCTGGGGGTGCTGGTGGCGTTCAAGATGTCGACCAAGAATTTCCGAGTCA1430.12147468569486918No Hit
AAGTTTGGGAACTATACAGCTTGTCAGTGGAGGTTCCAAGATTCTTACCACT1420.12062521236833162No Hit
TCCAGAGTGGGTAAAAACTCAAAGTAATAGTCTCAAATTCAAAGAAACATTT1420.12062521236833162No Hit
CTCTTTGCAGGGAAGTCAAATTATCTGTTAAAAACAAACTATAAATAAATAA1410.11977573904179409No Hit
CCCCACCTGCCTAGTACTCTTACATGAGCCTTTTACATTTTTTTAACCCATT1400.11892626571525654No Hit
TACTAAGGGGATGGAAGGCGACGCACAAAAGCTTGAAGTAGAAAATGCCATG1400.11892626571525654No Hit
CGAAAGGGGAAACCTACCACACTGCAAGTCATAAAAAAGTCTAACACATGCA1400.11892626571525654No Hit
CATCAACCCCTTACTATAAAATGAATAAATAACCTGCATTTTGTATAGAAGT1390.11807679238871899No Hit
TTCCAAGGGCTGGACTTCTAGAAACAAGTGAAGTGTGCTAAAGTCTCCTATT1390.11807679238871899No Hit
TGAAATGGGGAAGTATTAAAAGCTTAATCTTGATTCCGCCACATCTCCCTAG1390.11807679238871899No Hit
TAATGCGGGGCACGCGGCCATGGCCGACTCCGAGCTGCAGCTGGTTGAGCAG1390.11807679238871899No Hit
TACCCGGGAAGAAAAGACTATAACAATACTATAAAAAATTTAATGCCACTAC1380.11722731906218145No Hit
TATTAAGGGGTTTTGAGTGAGTTTCTTAATCTCGAGTTCTAATTTGATTGTA1380.11722731906218145No Hit
GAAGCAGAAGAAAAAAAGACAAGCTAGGAAACAAAAAGCTAAGGGCAAAATG1370.1163778457356439No Hit
GAGCCAGGGTATTCTGCTGGAAGCCCATGAACCATCGCTGAGGTTCTGATAC1370.1163778457356439No Hit
CAGCTCGGGGTCATAAGCTCCTTGTGAACCCAAACATCCCATCTCGACACAT1370.1163778457356439No Hit
TTTTATTGGGAGATTCTTAATCTGACTTACATGTTACTTTATCCGTATGTCT1360.11552837240910636No Hit
TGGCTAGGGAAATTCAAACAAGACTCTTTCCAATTTAAAGGGCCAAACCCTA1360.11552837240910636No Hit
TCGACAGGGAACTTATTTTTCATAAAGTAATCACATGTTGATAGAAGCTTTT1360.11552837240910636No Hit
GTATTAGGGAAGTAGAAGAGCAGCGTGAACAGGAAGCTAAGCATGAACGCAT1350.11467889908256881No Hit
CTGCTTGGGGAGATGTGCATAAACAGAGAAGCTCAAAGGGAGGCAGAGAAAC1350.11467889908256881No Hit
GGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTTTTTTCTCTTTGAAAGA1350.11467889908256881No Hit
TTTCCTCTACCTCCTTCTCCTATTTCACCTGATACTAGAATTCCTCCTTTCT1350.11467889908256881No Hit
GATGCTGGGGTGAAAAGAGGCAGGAAGAGAAGTGTCAGGGAGTCAAAGATAG1350.11467889908256881No Hit
TGTCATGGGGATCTTAGCGAGGGGTTTAAAAATGTGATTCAGCATGATTCCA1350.11467889908256881No Hit
ATTGTAGGGTGCTTCTCGGAGGAAAATCTTAATCTAGACAGATTCAGATTCC1350.11467889908256881No Hit
TCACATGGGATCAAAGGAGAATTTTTAAAGCCTTAACAATGCCTACTTTCCA1350.11467889908256881No Hit
GTTCGTGGGGATGCCCTTCTGAGTTGCTGCTATGCCAGTGAAATGGAGAGAT1340.11382942575603126No Hit
GAATGTGGGGAATTATAATTTAAACTGTTTAATTTTGTTTAATGTGTATATT1340.11382942575603126No Hit
ATACACGGGAAACTACCATCAGAGAATACTATAAACACACTGTGCGAATAAA1330.11297995242949373No Hit
CTTGCGGGGCAATGAAACTTGCAGAGGAACATTTCATGCCTTTAATTAGTTC1330.11297995242949373No Hit
ATTTTTGGGGTCGGATGAGAATGATGTTTTTGACAAGCTAAGTGTCATTGCA1310.11128100577641861No Hit
GAAAAAGGGAGCTCATTTTATTTATTCATTAAAAAATTATCTTATTCATCTT1310.11128100577641861No Hit
GACACAGGGACTGGAAAGCAACATTAGAGTTGTCCTCAGATGAAAAGGAGTT1310.11128100577641861No Hit
TTTCTTGGGGACTACAGGTGTGCGCCGCTTCACCAGGCACCATATTGTTTTA1310.11128100577641861No Hit
TACGCGGGAAGAGACAGGCAGGTGATCTGCTGCAGAGCAGTAAGGGAACAAG1310.11128100577641861No Hit
GACAGAGGGGTCAAATTACAGCTTCTTGTGTTCACCACGGAAGTAAATGATC1300.11043153244988106No Hit
AATACGGGGTAACAGAATTTACAGGACATTTTACTCAAGAGCTTCAGAATAT1300.11043153244988106No Hit
GTTGCAGGGGTTTCTAAGAAACTGTATGACCAGAAATGAATTGTCTTTGATT1300.11043153244988106No Hit
GTTCCAGGGTAACAACTTATATTTGTCTCACATTAGAGGAATGGTTAAATAA1300.11043153244988106No Hit
TTAAGAGGGATGATCAGTGGATAAAATCACAGAAAATTGTCAAATTTCCTCG1290.10958205912334353No Hit
GCTAGGGGATTTTGGTGCAGTGAGAATTTATAGAAGTAACCAGCTTGATGGA1290.10958205912334353No Hit
CTATCAGGGCTAGTAAAATCATGAAACTCTTGATACAGTTTTATTTGCATTT1280.10873258579680598No Hit
GCTACTAGGTTTTGAACCAAGTAGCAGGCAGAAACTAAAAGGGCATTGAAAA1280.10873258579680598No Hit
AAAGGTGGGAGAACAGGAGGGAAGAGAAAGAGAAAACTTTCTTCCCTTCTAC1280.10873258579680598No Hit
CATTCTGGGGGACAGAGAATTTCTGTTGTTAGGAATAATGACAGTATTCTCC1280.10873258579680598No Hit
TGTTGCGGGATCCGTATCCCCCTGTGTAGGTAGGTTCTTTACTGAAGGTTCT1270.10788311247026842No Hit
GATTAAGGGATTACTAATTCAGATCCCTTTTGGTACTTAAATGTCACCCTAG1270.10788311247026842No Hit
ATAGCAGGGATAACCCATTTATTGCCTTCTGGCAAGAAACTGGCGCTTGCTG1270.10788311247026842No Hit
GCCAATGGGGATCCTGGCTTTTAAGAAATTATTATTCCTGCTCTGCTGAGAA1270.10788311247026842No Hit
CTCATTGGGAGCAACAGAAAAATTGGTTAAGTATTATTATTAAAGAAAAATT1270.10788311247026842No Hit
TGGATGGGGAGAAGGGAAGAATTTAAAAAATGAGATAATTCCGGTGTCATTG1260.10703363914373089No Hit
TATTATGGGCCTCATCTCAAAAAAATAAAAAGGATGTACTTCAGAAGGATGG1260.10703363914373089No Hit
TGTTCTGGGCTTTAAGAACAGGTATTATTTACTAAAGGTGAATTACCATGGC1250.10618416581719334No Hit
ATAACAGGGGTGATTGTCTGGGGGGATTCCTGGGTTTCCCTGGGTACCTTGT1250.10618416581719334No Hit
AAAGTAGGGTATAAATACCATTAAGAGTTAGATACAAGGAGGTTGAGAAGCC1250.10618416581719334No Hit
CCTTCAGGGCCACTTTTACTAAATTTGCTCTTTCAGTCTACTCATTTGTTAT1250.10618416581719334No Hit
GTAATCCCAACTACGTGGAAGGCTGAGGCACAAGAATTGCTTGAACCTGGGA1250.10618416581719334No Hit
TTTTAGGGACACTGGGCCCACATTAGAATGGGATAACTATGATTTAAGGGAA1250.10618416581719334No Hit
GCACATGTACACCTCAACTTAAAGTTTAAGAAAAAAAGAATGCTGGTGGGAA1250.10618416581719334No Hit
CCGATAGGGGACTGAAAACTATACAATGCTATTGAAAGAAACCAAAGATCAA1250.10618416581719334No Hit
CAACCAGGGCAAAAAAACCACTCTAGCAGGGCATGGAGAATAGATGACTGAT1250.10618416581719334No Hit
TGGTACGGGGATCTTCTTGCGGGAACCCAAACCCAGCAGAAGAAAAGAAATA1240.1053346924906558No Hit
TAACTGGGGCTGGCTATCTGAGTATTCATCTCAATGCCCTGCATATAGTATG1240.1053346924906558No Hit
ATAGATGGGTAGTTTAGCTGGCCCTCCTTGTTTGCACAGCTCTCCGATGAAT1240.1053346924906558No Hit
CCTCCTGCTTGTACTAAGCCAGGAGGCTTTAAGCTCCAGCTTTAAGGGTTGT1240.1053346924906558No Hit
CAGCGAGGGGTTTTGTTTTTTACTATAAATTTGTGGCAGTGAAGAGTTTTTG1240.1053346924906558No Hit
TGAATCGGGGGGAAACAGCATGTGCCTCATGAATTTTCTTTTTTGTTAATAA1240.1053346924906558No Hit
AAGCAGGGAGTACCCTTCTGGCAAACAAATAACTGAATTGCTACTATTTAAC1240.1053346924906558No Hit
TCTATGGGGTCCTTGAAATTGAGTTCCTTTGGCATTTTTCCTTGCAGTCATC1230.10448521916411825No Hit
AGAATGGGGCAAAAATATTGTCGAATGAATGAATAATTAAGTTAAATTCCAG1230.10448521916411825No Hit
TGACCAGGTGTACTTGGTAGATTATGGCCTTGCTTATCGGTACTGCCCAGAA1230.10448521916411825No Hit
TAGTGTGGGATTCTTATTCTGAAGATTTTTGCACACTCAGGCTATCTGAGAT1230.10448521916411825No Hit
TACAGCAGAATTTTAAAAAAAATAGATGTCTCTATCTTCATTCCTACATTTC1230.10448521916411825No Hit
AACAGGGGCACTCCAGGTGGTTATTGAACACAAAACAGTAAAAGAATATTGC1220.1036357458375807No Hit
TACCATGCCAGAGGAAGAAAAGGAAATGTGCAGAAGAAAAGGAAATGTGCAA1220.1036357458375807No Hit
CCACAAGGGGTGGTTTTTTACAGGAGTTAAAGTACATAAATGCCTTTTTACA1220.1036357458375807No Hit
AATACAGGGATACCCAGTAATGGGATTGCTCAGTCGAATGGTATTTCTGATT1220.1036357458375807No Hit
AGAGTAGGGGTCAGTTCCTATGGGGAGCGCTTTAGAACTTTCTCTCCTTGTG1220.1036357458375807No Hit
TTTAAGGGGATGCCTGTGTGTCTGTGTATACTTGATTCTAAGGAATGAATGA1220.1036357458375807No Hit
GGTTCTGGGGAAAAACCAACAGTATAGAAAATGAGAGAAAAATAGCAAGCAC1210.10278627251104316No Hit
ACAATAGGGGAAGATACATGACCTAAGCTTTGAAGATCGTTTAACTAATTCA1210.10278627251104316No Hit
TAGCGCGGGTATAAAGTGATTAGTTGAACTGGCATCCTGCTTTAGCCTGAGA1210.10278627251104316No Hit
GTGGCCGGGAAGGAGATGGACTGTGTGAAAAGAGATGAGAAAGCAGGCCTGT1210.10278627251104316No Hit
TGTACTGGGGTTCACCAATCCTACTTTTGTTGCTCTTTTCTGCCTTGTTTTC1200.10193679918450561No Hit
AACTACGGTGAGATGAAATGAAATGACATAATGAAATGAAATAATGAAATGA1200.10193679918450561No Hit
CAAAAGGGGAGATGTCGATGACTGCAAGTAATAATACAGTTTATAATGAAAC1200.10193679918450561No Hit
TGCTATGGGGACAGTTATTGGGAGTCTAGCAAGATGTCTTTCATTCTGTTCC1200.10193679918450561No Hit
GTAATCGGGACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGC1200.10193679918450561No Hit
TTAGGACGGGCAAACATTTAAAGAAAAATTAATATCGATCCTACACAAACTG1200.10193679918450561No Hit
GCTGTGGGCATGCCACTCAGGCTCCATTAGCGATATCATATTGGCATAAATG1190.10108732585796806No Hit
ATTCTAGGGCAGTTCCATCTGCATCCCTATTGTGCCTCCCAAAGATGTCCCT1190.10108732585796806No Hit
GCAAATGGGATGCCACCATACCTAGTTTTTTTTGTTGTTGTTGTTTTTTTAT1190.10108732585796806No Hit
GAAATAGGGAGATGTAATTCAATTTGACTAGTGTTTATTAAGTTCCTAATAC1190.10108732585796806No Hit
TAATTAGGGATGGAGAAACTAGTCATGGGCCAAAGGTCAAGATACTTCTCTG1190.10108732585796806No Hit
CATGTGGGGAGAGGTTATGCATTTTCCTTTAGTTATTTTATTTTGCTATACT1190.10108732585796806No Hit
TAGCTGAGGGTCCATAAATCCACATTAAATACACATCCAGACTTCTTGAGGT1190.10108732585796806No Hit
TGCCAAGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTA1180.1002378525314305No Hit
TAGCCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1180.1002378525314305No Hit
CGGGCTGGGATAAGTTCTTTTCTTTGGTAAAATTTTCCAGTGAGTTCTAGTC1180.1002378525314305No Hit
GCGGGCGGGGCCTTAGCCAGAGTAAGGCAGCGTGGGAAAGAGCTCACTCCCT1180.1002378525314305No Hit
CGTTGCGGGGTGAACTTTCAATTATGAAATCTGTGGAGCTTGACAAAATCAC1180.1002378525314305No Hit
TTTGCTGGGAATCTCTGCTTTTCTAAAAGCACTTTGGTCAAGTCACTTAACC1180.1002378525314305No Hit
GCACTGGGGCTTTAGTTTTCTTATTGTGTTGCCTAAAGTATTGCATCATTTA1180.1002378525314305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)