FastQCFastQC Report
Sat 31 Dec 2022
SRR5843862.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843862.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84096
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGTATTCAATCTCGTATGC4130.49110540334855407No Hit
CTTATACACATCTCCGAGCCCACGAGACGGTATTCAATCTCGTATGCCGTCT3750.4459189497716895No Hit
GAACATGAGGGGCGGTTGGTCAGACCGGAGCACTTGGCCTGAAGACCTGGAA1410.16766552511415525No Hit
ACAACTGGGTACCCGAGACTGTGTAATTTATGACGAAAAGAGGTTTAATTCC1330.15815258751902586No Hit
TAACCAGGGGTAGGAGGGATTTCGGCCTGAGAGCGGGCCGAGGAGATTGGCG1330.15815258751902586No Hit
GAAAACAGGGTGGTGGAATTTTTATTGAAAAAGAAAGCAAGTGCACAATGCC1290.15339611872146117No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG1230.14626141552511415No Hit
TCTGCGGGGGTTTTCACTTTAGTGGTTCTGCCTTCTAGTCCACAGAAAAGTT1200.14269406392694062No Hit
TACTGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1190.14150494672754946No Hit
GTCCAAGGGATGCAAAGTTATCAAAGAAGAGGAGAAGGAAAGGAGGACAGAT1180.1403158295281583No Hit
CTACAAGGGCGGTAGCGCTTGCAGCATGGCTGACCAACTGACTGAAGAGCAG1180.1403158295281583No Hit
ATTAGCGGGAGTGAATTGCCATTGCATTTATATATTCATTTTGTAACTGTCT1170.1391267123287671No Hit
GGTTTTGGGACCATGTTGGCAAACTTAAGAGTAGATGACCTCTCAGTCCCTT1170.1391267123287671No Hit
ATCAAGGGAAATCAGAGTCTTTAATTCTTGCATGTTTGTATCTAATTTCTGA1150.13674847792998476No Hit
GCGACCGGGGCATGAAGTTTCGTTGAAATGACAAATACTAATTTCTTCATCT1150.13674847792998476No Hit
TGACCGGCGGTCAGTCTGCGGCAGCGGCAGCAAGACGGTGCAGTGAAGGAGA1130.13437024353120242No Hit
CAAGACAGGATTGGTGATTTTCTGGTATTTTACCACACTTCTGAGTTGATTT1130.13437024353120242No Hit
AGATTAGGGCACCGATAAAAGACAAACAGCAAAATCATCATGAGTGAACGCC1110.1319920091324201No Hit
GAAAAAGGGATCTGTGCTTCACTCAGTCTAGAAAACCTGCTTGTCATAGCCA1100.1308028919330289No Hit
TGCCTAGGGGTGAAATCAGTGCATTGATTAGGCAGAAGAGACATGAACTGGA1090.12961377473363775No Hit
GTCAAAGGGGCTCTTTCATATTTGTGGAACCCTATGTCAAGAGAGAAAACAT1090.12961377473363775No Hit
TTGATAGGGATCGGAAAATTCATACTGGAGAAAATCTTTACAAATGCAAAGT1080.12842465753424656No Hit
AGATTTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1080.12842465753424656No Hit
GGACCAGGGATACTTATTGTAATGGTATATTCAGATGGCACGATATTTTTGC1070.1272355403348554No Hit
TTGAATGGGTCTGAGCACGGGACTGGGAATAGTGTTAAACAAAACAGATTCT1060.12604642313546421No Hit
TAAAACGGGTTGTAAAATGGACTTTCTCATATTTCAATGGCTCTCTCTCTGC1060.12604642313546421No Hit
GCTCCGGCTGCATGGCTTCACGGGCCACAAGGACTGGATGGACAAGTGTGTG1050.12485730593607305No Hit
CGATAGCGGGTTGTAACTAACTAAATATAGTAGATTTTTAAATTTTATCATC1050.12485730593607305No Hit
GGCATAGGGCTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCTG1040.12366818873668188No Hit
CGTACAGGGATTTCTTGAAATTATATTAGTGGTGGGTTAGGAAGTGGATTTA1030.1224790715372907No Hit
TTGCTTGGGACGCCTGGACTTTCTGCAGGCCTGGATCCAAGATGGCATCCCA1020.12128995433789953No Hit
TTATGCGGGCAAGGCCAAAGATATAATTAAGTCTAAGAAAGAATCCTAAGTG1020.12128995433789953No Hit
TGAAACAGGGGCTTCCGGTTCTAGGCGCTTCGGGAGCCGCGGCTTATGGTGC1020.12128995433789953No Hit
GCGCCTGGGGGAATGGGAAAGGAGACAATGGCAACAAAATGTTGGAAGCTGG1020.12128995433789953No Hit
AATTGCGGGGCCAGCTTGTGAAGATGTGAAGGCCAAACCAGTATCCGACAAT1010.12010083713850836No Hit
TATACCTGGGTGTTGCAGTGAGCTGAGATTGCATCACTGCATTCCAGCCTGG1010.12010083713850836No Hit
TAATATGGGATACAAGGCTGTTTTAGTATTCCAAAATTAATTCATGAAATTT1010.12010083713850836No Hit
TCAACTGGGGCGGGTCATAAGCAATCCCAAACTACCAACAAGAGGACCTTGA1010.12010083713850836No Hit
TGTAATGGGGGCTGTGCGCGTAGTCTGAAAAGCAGAAGTCAACATTTTTACA1010.12010083713850836No Hit
AAACGAGGGGTAGAAATTTAAAAATAACAAATACTATAAACTGTCACACAAA1000.1189117199391172No Hit
GTACAGGGGGAAACGAGAAAGTACTGAAGGGTAAGAAGCATAGGTAGATTAT1000.1189117199391172No Hit
GATGAGGGCAGAGCAGAACTGAATGAAATTCACACAAAGGATCAACAAAACC1000.1189117199391172No Hit
CAAAGCGGGATGCCCGTGTCAACCACAACAAGTACATGGTGACTGAACGCGC990.11772260273972603No Hit
CAGCAGGGTATGATTCTTGAGGTAACTCTACCAGATACTTCCAGATTTAGAA990.11772260273972603No Hit
ACCAAGGGATGAAAGCTGTAGACCCTGTCCATAGAAAAAATAGTGCACACTC990.11772260273972603No Hit
TGAGGCGGGATGTAGTTAACAGATAAAAGTTTAGATAATGAATAAAATCTCA990.11772260273972603No Hit
ATTTGTGGGGTTACTTGTCTTTATTATTGTCAACACAAATTGTGAGTCGAAG990.11772260273972603No Hit
CGAGTTGGGAACCTGTAAACATCTGAATGCTTTCAGGACAAGGCAGGTGTTC990.11772260273972603No Hit
TACTGGGGGCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTA980.11653348554033485No Hit
ATACGACAGGAGATCATCCAGGACTTGGCCTCCATGGTCCGGGAACTTCTTA980.11653348554033485No Hit
TGCCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG980.11653348554033485No Hit
TAATAACGGGGATGAGAGAAAGCAAGAACCCTACTCACTCATGGAGATCTTC980.11653348554033485No Hit
CGAACGGGGGGACTTTTATGGCTCTATCTTTTCCTTCAGTGAAGAACCCTAT980.11653348554033485No Hit
AAGCATGGGGCCTGCAAAAACAGAGGTGGATACGAGGACAGGTTGGAGCTGC970.11534436834094368No Hit
GGTACAGGGAAGTAAAAGGACCATAGAGGGGAACCAGGAATCTGAGAATCAG970.11534436834094368No Hit
TTTACCGGGATAGATGATGCTTATAGACAAGGACATTTTACCTATAAACCTG960.1141552511415525No Hit
GCCACTGGGCCATAAAGAAAATTGATGAGGACAACTGGCCTCCCAATATGTG960.1141552511415525No Hit
TCGCCATGGGTTAACCCAAAGAGGGAGTCCTGGGAACCCCAATTTGAAGACA960.1141552511415525No Hit
TTGCTGGGGTGAATAGTTGAAATGTATATTTGTACAGTCTTTTAGACCTATT960.1141552511415525No Hit
GCTAACGGGATCTCCACCCATATTACTTTTTCTTTTGTTATTTTCATATTTT960.1141552511415525No Hit
GACTAAGGGGACAACGAGGGTGACACCTACTCTTTAGTAGACATAGAGAATA960.1141552511415525No Hit
TTAGCAGGGCAAGAGAAGAGAAATTATTTCAGATGTGCCAGAATAAAACAGA960.1141552511415525No Hit
AAATGGGGGAAGTGGGTAGATATTTGAATTTCTGAATGCTTTAGAATATTAG960.1141552511415525No Hit
TACTCGGGGAGCTTTGTGCCTAGTAGATTGCTTCTGTTCTGCACTTCTTTGG960.1141552511415525No Hit
GGGCACGGGCGGCAGGGCAGTGTGCCCTAATTCCACGAAGAGGGGGCATGGG950.11296613394216133No Hit
TTTAAAGGGGGGTCTAACGGACCCTAATGAGATACTGAGGATTAAACACTAG950.11296613394216133No Hit
TATACGCGGGCACGTATTAATCACTTCAGCCCTTGCCGACCACCCAGTTCTC950.11296613394216133No Hit
TAAGGAGGGATCATGTATAAAGCAAACACCATCAGTCTAATAGCAGACCATT950.11296613394216133No Hit
AGAATAGGGAGCTTTTGCATATGCATGTACCTGTGTTACTACCACCCAGATC940.11177701674277016No Hit
ACATAGGGGGCTTCCTTTAAATGAAAAGGTGAAAGTTCTCAACTTAAAAAAG940.11177701674277016No Hit
CATCCAGGGATTTATGGAGGGGCAAGATTTCACCATTCTGTGAAGAACTCTG940.11177701674277016No Hit
TGCGTTGGGCATTGGTAAATTCTACCAAACATTTAAAGAAGAATTAACACCA940.11177701674277016No Hit
TAAACTGGGATAGAGAATGATTAAATGTGAGGATAGCTATTTTAGAAAGGGT940.11177701674277016No Hit
CAAATTGGGGATAATCTCAGTTAAAGCATACAATTAAGATTTAAGTTTTCAC940.11177701674277016No Hit
GGCATAGGGCAGTCGCCGCGGGACCGGGGCCGCTGGGGTCTGGACGGGGGTC940.11177701674277016No Hit
TAATTAGGGGGCGTTCTGAGCCGTCTGTCCTGCGCCAAGATGCTTCAAAGTA930.11058789954337898No Hit
GTAGTTGGGACAGGACACCCCATAAGCAATTGAATCGCATTATTAACTTTAA930.11058789954337898No Hit
CCGCCAGGGGACGCTCTTCCGATCTCTGTAAGGGAGCTTCTTCATGGAGTAA930.11058789954337898No Hit
GCACCTAGGGGTTGTTGTGTTAGTTTAAAACGATAATAAAAAGAAAGAAATT930.11058789954337898No Hit
TAGCACGGGGGTTTGGTAAACTGCATTGTCCTGAAAGATTCAGTTCCTTATT930.11058789954337898No Hit
GGCTCTGGGCAGGCAGATAGAAGGAGAGCAGAAAGCTCTCCTCAGTTGCTTT930.11058789954337898No Hit
TAGCTAGGGAGGACTGGAAGGTGGCTAGGGATGTGTAGCGGGAGAAGGGTCA930.11058789954337898No Hit
TTTATAGGGAGATTGAATCTCTTCTGAAATCACGATTTCTTCCTGGTAAATT930.11058789954337898No Hit
GGAAACGGGATGGTATTTACAGTGAAAGAGTAAATTAGAAAGTGAATGGATG930.11058789954337898No Hit
GCATAGGGAAGAGAATTCATTTTCAGCAGACCATGTGACTACTGCAGTTGAG930.11058789954337898No Hit
GAAACAGGGGAATAGGGAATAACTATGATAAATTGCTTAAAATTTTATTATA930.11058789954337898No Hit
AGCCATCGGGGGAAGCAGGTTAAATGTTTTGTAAACTTTGAAATATATGGTC930.11058789954337898No Hit
ATCTATGGGAGTTTCCAGCAGTTAGAACATTTATCATATGTGTCTTTGTAGT920.10939878234398781No Hit
TTTGATGGGAAATATTTTTAGTCCAGAGGTTTTAAGCTGTGTGTCCATTCCT920.10939878234398781No Hit
TAACATGGGCTGACAAAATACAAATTACCATAGTTAAATCTCAGAAACCATG920.10939878234398781No Hit
CACTGTGGGTCTATAATAAAATGTGATAGAACAGTTTCTTCTGATATATGAC920.10939878234398781No Hit
TTACATGGGCATCAAGCAGTGTTCATTTATCCTGTCACATGTTTCTGTTTCT910.10820966514459665No Hit
GGATCAGGGATCCAATGGGAGAGTAGTGGCTCAAGGCTCCTGGGCTGCTGCA910.10820966514459665No Hit
TGTCATGGGGATATCTCCTAACTATCACACAACTTCCACTATTACAATGAAA910.10820966514459665No Hit
AAAAAGGGGGGCTCTCTGAGTTGAGCATGCATCAGTTACCTTAAGGGCTTGT910.10820966514459665No Hit
GATGCAGGGTAAACAAGTTGTCCAATTGCCAAGAATATGTTAACAATTAAAA910.10820966514459665No Hit
ATCTCAGGGTATTCCGAGAATTTCTCCTGCCCAGGCATCCTCCTATTTTTCA910.10820966514459665No Hit
CTTTATGGGAGGCCAAAAAAATGAGAGAGAACATTTCATCTTTGATGAGAAA910.10820966514459665No Hit
CAATAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA900.10702054794520548No Hit
AGGCAGGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC900.10702054794520548No Hit
GTAGCAGGGTACACTGTTGGAAGGTAATTTCATTGCTATGTTATTAAAATGA900.10702054794520548No Hit
ACTCAAGGGGCTGAGTTTGTTGCTGTTGTTGTTATTGCTGCAGCAGCTGCTG900.10702054794520548No Hit
GTGTTAGGATTGAAGTAGACAAGGACTTTGAAATAACTGTTTGAAATATTGT900.10702054794520548No Hit
ATTCAAGGGGGACATTGCTCCATCATTTACTAGGTAAGAGACTGAGAGTGTG900.10702054794520548No Hit
GACGCTCGGGTCTTTGGGCGGGGTTCATTACAGCACTGCTGTTCATTTCATC900.10702054794520548No Hit
AGTTAAGGGAAGAGTTATCATATACAACAATTTAGTGTGTACGGAGTTGGTG900.10702054794520548No Hit
AACACAGGGAGTGGAACCAATTGTGCCCTTTTCTGTTTGCACGTTTAAGATA900.10702054794520548No Hit
GTAGACGGGACGATAGATCAAATGTACCTAACACATATTTACAGAACATTCC900.10702054794520548No Hit
ATGCCGGGCATGGAGGGAAGTTTGGTTCTTTTCAATTAAGTCCGGAATTAAG900.10702054794520548No Hit
GGTCTTGGGGATAAAATAGAATGAATGAAGCCTTCAAGACACCAGAAACCAC900.10702054794520548No Hit
TATCTCGGGGGAAGCACAGGGGTCCAGTAGAGTCTGAGCTTCCTTTCCTAAG890.1058314307458143No Hit
GAATGAGGGATGCTCTGCCCTCTGAGGCAGTCAGCGAAGGCAAATGGTCTGA890.1058314307458143No Hit
AGGTAGGGGGGAGTTCTTTGGCTATTGCACTTTTGAAATTATTTGCAAATAA890.1058314307458143No Hit
TAGCTAGGGCGGGAAGTTAAAATTTTCAGAAACAACAATATTAGTGATTTTT880.10464231354642313No Hit
CCAGTTGGGAGTTTGATGCTGAGTCATGCGTGTTGAATCCCACTTCAGTGCA880.10464231354642313No Hit
TTAGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA880.10464231354642313No Hit
GCCATGGGTCTGCAGATTTTTTTATTATGGTGCAGCTTTTTTTTAATTATGT880.10464231354642313No Hit
CAACATGGGATTGAACATTTTAAAAATAGCTAACTTACAGGAGATTTGATAT880.10464231354642313No Hit
GCCTTTGGGATGACTTTGCTGCATATATACTCGGTTTTGTTCTTCTATCAGT880.10464231354642313No Hit
AATTGAGGGAATGAGTCGTTCTTGGAATACCTATGTGCAGCCACTACCCATC880.10464231354642313No Hit
ATTTTGGGGGTATGCTGAAACTTTTTTATGGCACAGAAAATGACCTTTCTTA880.10464231354642313No Hit
TCATGCGGGAAAAACAGCACGTCTTAAAACTTTTACTGCCAACCAGATAGAT870.10345319634703196No Hit
TATTTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC870.10345319634703196No Hit
CGAAAGGGGGAGAGAGAGAAAGCAGAAGGAGTAGTGGTTGTGAGACAACTTC870.10345319634703196No Hit
TAGATCTGGGATTGACATACAAATTCAGGTTTGAATCCTTGCAAAATCACAT870.10345319634703196No Hit
ACTTGCGGGATTATGGGAAAGCGATCATCTAATGAAGTGTTGAATGTGATAC870.10345319634703196No Hit
TCATGCGGGGATAAATTTCTATGTTGTTTAACTATTTTACAGTGAAAACATA860.10226407914764078No Hit
GGATAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC860.10226407914764078No Hit
TCATGGGGGCATCACAGTCAGAGGTCAGCAGGAAGCTGAGTCATTACCTTCT860.10226407914764078No Hit
TATCATGGGCTGAACATGAAGCTCTTGATTCCAAAGAGGTAAATGTAAGATA860.10226407914764078No Hit
GTGATGGGGGTTATAAAGTTTCTAAATGCTTGCTTCCATTTTCTATATTTAG860.10226407914764078No Hit
CAGAAAGGGGTTTTAAAGTAAATGATTATTATAAATTCCAATGGAACAGATA860.10226407914764078No Hit
GATTACGGGGTTCAATGGCTGGCTCTAAATGCTTCATTTCAGTAAAGTTGAT860.10226407914764078No Hit
AAATTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA860.10226407914764078No Hit
GATCTTGGGGAAAATAACTCTGATGGGATAAAGCCCCCTTTGTAAATTTAGA860.10226407914764078No Hit
CACGCAGGGCCTAACATATTTGGAAGTTCACAAATGGGTGCTACCATAGTAG860.10226407914764078No Hit
GTACTAGGGAGGTGTGCTCCTGTGAGGCAGGAAGCTGTAGTGGGGAGGCTGT860.10226407914764078No Hit
TACCTGGGAAGATCTATTTCATAATCAAAGTTCACATAGAATAAACAAGTGT850.10107496194824961No Hit
AGAGGTGGGAATAGATTTTTCTTTAAGAATTTTATCAAATATTTCACTATTT850.10107496194824961No Hit
GTTTCAGGGAGGCGGCATTCCCTGCCACAGTGGCGGCTTGAATCATCAAGAA850.10107496194824961No Hit
AAGTGAGGGGGGGGCCTGAATATTCCAGAGCTGATGTGATGGGCTGTGCAGA850.10107496194824961No Hit
CGACTGGGCGCTCTTCCGATCTGTATAGGGGGAGGCATTGAGGCAGCCAGCG850.10107496194824961No Hit
GTTTAAGGGAACTTCTTTAGGTAAGATCTTATTTACTTTTCCTTTCTTAATT850.10107496194824961No Hit
AACCTTGGGATTCCTAGTTGCCTTGTCACTGATTTTATACATTTTAAATTGT850.10107496194824961No Hit
GCTTTGGGGTATGAGGTATAATTCATTGTGTTTTATTTTACAGACAAGTGAT850.10107496194824961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)