FastQCFastQC Report
Sat 31 Dec 2022
SRR5843788.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843788.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25480
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.25117739403453687No Hit
TTTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.23547880690737832No Hit
CATCGAGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTCG480.18838304552590265No Hit
CTTGCAGGGGGAGGCAGAAGAAGAATTCTGGCAGAATCAGCATCCT470.18445839874411302No Hit
AGCGATGGGCGATACATACTATGTAGTAGCCCATTTCCACTATGTT450.17660910518053377No Hit
TACGCCGGGGAACACAAGTGATCCTGACATGAGACGGGAGATGGAG450.17660910518053377No Hit
CATGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC450.17660910518053377No Hit
CACAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA440.1726844583987441No Hit
ACAACCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA440.1726844583987441No Hit
CTTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.1726844583987441No Hit
ACATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.16875981161695447No Hit
AGCCACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.16875981161695447No Hit
TGCGCTGGGAACTGTCTAATTTTCTTACTTGTGTTATTGTTTGAAT420.16483516483516483No Hit
TTAATAGGGGCAGTCATAGCAGCATTCGTGGGAGATCCAACCTACG420.16483516483516483No Hit
GGCGTGGGGGTGGCCGCGGCGCGGGAAGGACAGTGAGCGGCCGCGA420.16483516483516483No Hit
CATACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.1609105180533752No Hit
GACTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.1609105180533752No Hit
CGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.1609105180533752No Hit
GCTTTAAGGGGCCTCTTGAGGTTGTTCAAAGTCAAAATCTTTGACA400.15698587127158556No Hit
GTATCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.15698587127158556No Hit
TAGACATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.15698587127158556No Hit
TTCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.15306122448979592No Hit
TGCCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.15306122448979592No Hit
TGCTTAGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGCC390.15306122448979592No Hit
TTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC390.15306122448979592No Hit
AATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.15306122448979592No Hit
AGTCCGGGAAGAAACTCAAGCTGGACATAGACAAGAGCGTAAGGCA390.15306122448979592No Hit
CTATGGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.14913657770800628No Hit
TATCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA380.14913657770800628No Hit
TGCGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.14913657770800628No Hit
AGTTTGGGGCATGTTTTCTCATGCTCTAATGTAAATGACCAAAATC380.14913657770800628No Hit
TTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.14913657770800628No Hit
AGTCTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC380.14913657770800628No Hit
ACCTTGGGGGTGGAGATGGATGAGACAGACCGAGAGGTGGAGTACT380.14913657770800628No Hit
CCATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.14521193092621665No Hit
GAAAACGGGACTTGTGAGGATCTCAAAGCTCACACCACCTTCCAGA370.14521193092621665No Hit
ATTCGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC370.14521193092621665No Hit
ACTGATGGGGGGAATTCTGGACGTTAATTAGGGCTGAAAGCCCTAA360.141287284144427No Hit
TGCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.141287284144427No Hit
TCAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.141287284144427No Hit
CTGTGGGGAAGATTGTGTGCAGCTACTGTACACATAATGTCCTGTC360.141287284144427No Hit
ATACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.141287284144427No Hit
CTTAATGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG360.141287284144427No Hit
TAACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.13736263736263737No Hit
CCACACGGGGACGCTCCTAGAACTCTTCAAACCGATCTCTCGTCGA350.13736263736263737No Hit
ACCAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.13736263736263737No Hit
CAACGCGGGCGGCATTCAGAGTACGCTGATCGGCTTATGACGTATG350.13736263736263737No Hit
GTCAAAGGGGTCTCTTTCCGGTGGAGGAGTCTGGAGACGACGATCA350.13736263736263737No Hit
TGATTTGGGAGATCTAAGCCTCATCCTGACATCCTGCCCTCTGTGC350.13736263736263737No Hit
AATTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC350.13736263736263737No Hit
CTCTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGG340.1334379905808477No Hit
AATAGTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA340.1334379905808477No Hit
TGGCACGTGGCCAGTTTGCCCCTATTAGGTGGATAGGCACTGAGTA340.1334379905808477No Hit
TTATTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT340.1334379905808477No Hit
ATTTTAGGGAGGCCGGGGGAATGCTTAGAGGGAGGCGTGGCACTGG340.1334379905808477No Hit
GCATACGGGGCCGTCTCTACAGAGGAAGTTCTAGGTTGGCTCTCCT340.1334379905808477No Hit
AACAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA340.1334379905808477No Hit
TTTATAGGGGACACTCCTTGCCGGACACTTACGCATCCTCAGACAC340.1334379905808477No Hit
ACGGTCCGGGGAGCACTTGGGAGTGTGAGGCCTTCCTGGCTGCTTC340.1334379905808477No Hit
GGCCATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC340.1334379905808477No Hit
GTTGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.12951334379905807No Hit
TTTATTGGGCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTC330.12951334379905807No Hit
TCGTCGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA330.12951334379905807No Hit
TCCAGAGGGGACCTCGATCCATCGCGTATAGGGACGCCCCCTGCTC330.12951334379905807No Hit
TAATACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.12951334379905807No Hit
CTCGCCGGGCAAATCAGGAAGGAAAAAACAAACAAAAAAGCTGTCG330.12951334379905807No Hit
TCGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.12558869701726844No Hit
TGCCACCACACTCCTATTGTACAAAAAGGACTACGATATGGTATAA320.12558869701726844No Hit
ACAATCGGGAATGATCCCGCGGTGTAGTAATTCTACGGAATGCACG320.12558869701726844No Hit
GTAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.12558869701726844No Hit
TGTATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC320.12558869701726844No Hit
CAATCAGGCATGCTATTAATGATATTAAAATCCCAACTATACCAAA320.12558869701726844No Hit
AGGATTGGGGGACGCCAAGACAGCTGAAGTTGGTGTCTGTTAGACA320.12558869701726844No Hit
GCGTGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT320.12558869701726844No Hit
CAAATGGGGCAGAAATATCCAGAGAGATTTTAAATAGTGTTTTGGT320.12558869701726844No Hit
CATTTGGGGATATCTTATTGACCCAGATATATTTTGATCAACGGAC320.12558869701726844No Hit
ACATGATGGCCAAAAAACACCTGGAGATCAACCCTGACCACCCCAT320.12558869701726844No Hit
GACCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.12558869701726844No Hit
CAAACAGGGAGCCCAGGACCAAGTTAGAGGCTTCCTAGAGAAGGAG320.12558869701726844No Hit
TAGACAGGGCATACCAGCTAATCCACTAAACACCCCACCCCATATT320.12558869701726844No Hit
AACCCAGTATTAGTGATGTAGCTACACTATTTTTCTTTTTTTCTTT310.12166405023547881No Hit
AAAGCTGGGTCTCCTGAAGTGATAGGTGAACAGCTTCTGATTTTAG310.12166405023547881No Hit
CGCTAAGGGTGCTGTCCCTGGGTCAGCCTTCCATTCTGCTTTCCTG310.12166405023547881No Hit
AAAACAGGGATACTGCGAGGTACTAGCTTTGATGAGATCTGGTTTT310.12166405023547881No Hit
GCTGACATTAAGGAATTCATTTAAAACAAGCTTTTTCTTTGGAGAA310.12166405023547881No Hit
CTGAGAGGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTC310.12166405023547881No Hit
ATCTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA310.12166405023547881No Hit
TTCCACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA310.12166405023547881No Hit
GTCTTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.12166405023547881No Hit
GCCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.12166405023547881No Hit
GTAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.12166405023547881No Hit
CAGCCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC300.11773940345368916No Hit
AGACAAGGGGTCTTTATGAAGACCGGAGTTAATGGTGTCTTTAGAA300.11773940345368916No Hit
AAATATGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCA300.11773940345368916No Hit
TAAAGCGGGTGGGGATTGTGGTGAAGGGAGGGACTGGGGAGTCAGA300.11773940345368916No Hit
TGACTTGGGGACGCTCTTCCGATCTAGAAGAGGGGGGGAATTCTGG300.11773940345368916No Hit
GTAGCAGGGCTCTTCGCCATCTTTACCCCGGCAGGCCGACATCTAT300.11773940345368916No Hit
ACTCGAGGGGCCTTTAGAGCGATGGAATGGCCATTGTCATAGCACA300.11773940345368916No Hit
AGAAGAGGGGACACAGGATGAAGGGCATATCCAAAGATGATATTTG300.11773940345368916No Hit
CATTCGGGGATCTCTATGATTGGCCAGTTTGGTGTTGGTTTTTACT300.11773940345368916No Hit
GCAGCAGTCCTCTTGAGGTCCCCAAACCCAGATCAGTGGACCATCC300.11773940345368916No Hit
ACTATAGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCC300.11773940345368916No Hit
TCTAGGGGGGGTCTGACATTGGCGTCTTTGCTAAGGGTCACATTGA290.11381475667189953No Hit
GGCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA290.11381475667189953No Hit
TGTCCTGGGGCCGCAGCCATCTTCCAGTAACTCGCCAAAATGACGA290.11381475667189953No Hit
CGCAAAGGGATTACACTTACATAAGCACCTACTGAATTATTTTATC290.11381475667189953No Hit
ATCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA290.11381475667189953No Hit
ACACTCGGGAAGCAATAACTGGTTCTGTAATTTTTCCTAATCCTTC290.11381475667189953No Hit
CACTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC290.11381475667189953No Hit
GCTTCGGGGTTAGAAAGAACTCACAAAAACAAATAAAAAATAGCAG290.11381475667189953No Hit
CCTAGGGGCCATTCTGGTTGCCGCTTCTGTAGGAATAGACACACTG290.11381475667189953No Hit
GAATCTGGGAAGTCTGGGCTTTTCAAAGCTCCATCTACAAACAATG290.11381475667189953No Hit
TTAAACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC290.11381475667189953No Hit
GTGACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC290.11381475667189953No Hit
CACACTGGGGATCTTTTGTCGGGAAGACTAATGAATGCAAAGAGAC290.11381475667189953No Hit
AATCAAGGGATGAAGACATTGTGATTACCGTGATTCCTGAAGAAAT290.11381475667189953No Hit
TCCGCCGGGGGAGGTTCCTGTGTTTGGAAATCCGAAGATGCCTGAG280.10989010989010989No Hit
TTTCACGGGGACAATATTAGAGAAAAACAGCATACACATGGCTTTA280.10989010989010989No Hit
TTTAAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAAT280.10989010989010989No Hit
TATCGCGGGAACAAGGAGGGTGCCGGTCTTTATGAGCTTGAACACA280.10989010989010989No Hit
TTGTTAGGGGGTCCATTTTTTAGGATAAGGTGTTCACAGAGACAAG280.10989010989010989No Hit
CTTGTTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC280.10989010989010989No Hit
CCAAGAGGGAGTGTGTGAGAGGTAAGCAGCTAGCTGCAGCCAAGGT280.10989010989010989No Hit
TCACAGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC280.10989010989010989No Hit
TACTCGGGGGGGAAGTAGAACGGTGGCGGCGGCGGTGACTCTGGCA280.10989010989010989No Hit
TTTAGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC280.10989010989010989No Hit
TTTTCCGGGGGACTCAAAGATTTTTTTTCTGAGTAACTGGAATTAC280.10989010989010989No Hit
TGTGGGGGTTTTAACATGGCAGCCTCCGCCATAAAGGGGCTAAGCG280.10989010989010989No Hit
GAATCTGGGAATGGAGTTCAAATATACATAAGCCATAATTTATATC280.10989010989010989No Hit
GCAGAGCGGCATCCGCCAGACCTTTGGCTCCTCAGGAGCTGACAGA280.10989010989010989No Hit
ATCACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.10989010989010989No Hit
ACACGGGGGGACAGTGGAGTGATGTGCCCTGCAACTACCATCTATC280.10989010989010989No Hit
CTAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.10989010989010989No Hit
ACCCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA270.10596546310832025No Hit
ACCAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA270.10596546310832025No Hit
ATTTACGGGGAAGTATTTTTCTTTGCAGGATTCTTCTGAGCGTTCT270.10596546310832025No Hit
TAATGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAA270.10596546310832025No Hit
GCATATGGGTCTATCTATGCATTTTTTTACACTTACACATAAACTG270.10596546310832025No Hit
TAGTTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA270.10596546310832025No Hit
ATCTAGGGCAAGCAGCTCAATATCCACTCCAGGGGAGAAGCAGGGT270.10596546310832025No Hit
TTCAGCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA270.10596546310832025No Hit
CCAGCTCAGATCTTGCTTAGATGGCAGGTTCAGCGGAAAGTGATCT270.10596546310832025No Hit
CATAAAGGGGATCTAGAGTAGGGCATTAACTGGAGCCTTTTCAGCC270.10596546310832025No Hit
CGACCAGGGCCAAGGTCTCAGTATGTAGTTCTGGCTGTCCTGGGAC270.10596546310832025No Hit
AACACTGGGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAG270.10596546310832025No Hit
GGCTGAGGGCATGGACGAGATGGAGTTCACCGAGGCGGAGAGCAAC270.10596546310832025No Hit
AGATTTGGGGACGCTCTTCCGATCTTCATCAGGGGGTGCAATCTCA270.10596546310832025No Hit
CACAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT270.10596546310832025No Hit
AAATGCGGGGATCTAGCAGCGGGTATGGCCTACCCATTCCAACTTG270.10596546310832025No Hit
CCCCCCACACACACGCACACACACACTCACGCAACACACATTCTAA270.10596546310832025No Hit
GTGCTCGGGGCAGAGACTCAGTAAGGTGGTAAAAGATACGACCCGT270.10596546310832025No Hit
AATACAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC270.10596546310832025No Hit
TAGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA270.10596546310832025No Hit
CAATAAGGGGTGGGACTCACCTTTCCTTTCTCTCTTTTCTCCTTCC270.10596546310832025No Hit
CAGCTTGGGACCATTGGGCATACAGGCCAGTGGGTCCTTGGAGTTT270.10596546310832025No Hit
CGTTAAGGGATAGCACTTGTTATTGCATCAATCATAATCCAAACTC260.10204081632653061No Hit
TCACGGGGATGATTTCACTATAATTCAATTACACTATTAACCCTTG260.10204081632653061No Hit
TTTCCTGGGGGTAATGACTTCCACACCAACAAGCGCGTGTGCGAGG260.10204081632653061No Hit
CGACCAGGATGACTTGGGGGTGAACTGTCTGCAGAATAACCTAACC260.10204081632653061No Hit
ACCTCAGGGGCAATAACTCTTGTGAGTTTTAGATCGTGCTTGTTGG260.10204081632653061No Hit
TTCACTGGGTACTAAAGAAGGGTAAGGCAGAGTAGCCATGGGGGCG260.10204081632653061No Hit
ATAACAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC260.10204081632653061No Hit
CTCAGGGGTCTCTAGCTACCCACAAGGGAAGTGTATAGCATAAAAA260.10204081632653061No Hit
CTTTCAGGGGGCAATCGCTCTTGCCGTGCGAGATGCTAGCAAAAAG260.10204081632653061No Hit
TGTCATGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCG260.10204081632653061No Hit
GCGACCGGGGGCCCCTTGCGGGCCTTCACGCTAAGTGAACAGAGCA260.10204081632653061No Hit
TAGCCTGGGACTTGACGGCAGTGGATGTCCCAACTCGGCAGAACCG260.10204081632653061No Hit
AACACAGGGGAGAGCAATTCCGATGACTGTCCACAATCTGTACCTT260.10204081632653061No Hit
TCCTGGGGGGGCAGCTGGCCAGCCCCACAATTCCCCAGCATATTCT260.10204081632653061No Hit
CACCACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC260.10204081632653061No Hit
ACAACAGGGGTCCAGTCATGACCTCGATCCATCGCGTATAGGGACG260.10204081632653061No Hit
TACAGTGGGACTACCATTGCCAAATTGTATATGAGATATGAATCTT260.10204081632653061No Hit
AGCACAGGGGGTGACTTCCATGCACTGTCTTCCTCACCTGACCTCT260.10204081632653061No Hit
AACGCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA260.10204081632653061No Hit
AATGCTGGGACCAAACACAAATACGAAAAATTATAGCCTATTCATC260.10204081632653061No Hit
GACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC260.10204081632653061No Hit
AAATATGGGGTTCCTTGCTTGCTGGAGAGAGAGCACTCCGCCGGGG260.10204081632653061No Hit
AGCTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGG260.10204081632653061No Hit
GCCTACGGGGTGGTGACTATGAGATCCATGTGATGACGTTGCAGTC260.10204081632653061No Hit
ATATTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA260.10204081632653061No Hit
TCACTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC260.10204081632653061No Hit
TATCATGGGACGGTGTGCTTCAAATTGCGCTTGTCGGCTATACAAA260.10204081632653061No Hit
TACACAGGGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTC260.10204081632653061No Hit
TTACCAGGGGATGCTGATACCTGGCCATTTTTTCTCATCTCAAAGA260.10204081632653061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)