FastQCFastQC Report
Sat 31 Dec 2022
SRR5843787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24039
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.28703357044802197No Hit
TAACCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.27455384999376015No Hit
AACAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA510.212155247722451No Hit
TGCGCTGGGAACTGTCTAATTTTCTTACTTGTGTTATTGTTTGAAT490.20383543408627647No Hit
CACAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.1996755272681892No Hit
CTTGCAGGGGGAGGCAGAAGAAGAATTCTGGCAGAATCAGCATCCT450.18719580681392736No Hit
AATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.18303589999584008No Hit
CATGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC430.17887599317775282No Hit
TCACAGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC430.17887599317775282No Hit
CATACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.17055617954157826No Hit
AGTCCGGGAAGAAACTCAAGCTGGACATAGACAAGAGCGTAAGGCA400.166396272723491No Hit
AAAACAGGGATACTGCGAGGTACTAGCTTTGATGAGATCTGGTTTT400.166396272723491No Hit
GCTGACATTAAGGAATTCATTTAAAACAAGCTTTTTCTTTGGAGAA400.166396272723491No Hit
GCCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.166396272723491No Hit
GTTGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.16223636590540372No Hit
ACAACCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA380.15807645908731646No Hit
CATAAAGGGGATCTAGAGTAGGGCATTAACTGGAGCCTTTTCAGCC380.15807645908731646No Hit
AATCAAGGGATGAAGACATTGTGATTACCGTGATTCCTGAAGAAAT380.15807645908731646No Hit
TAGACATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA380.15807645908731646No Hit
GTCAAAGGGGTCTCTTTCCGGTGGAGGAGTCTGGAGACGACGATCA370.15391655226922918No Hit
GACCCCTGGCCATGCCTGTCCCATCAAGTATAGCCCAGAAGAGATC360.1497566454511419No Hit
TAACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.1497566454511419No Hit
TTAATAGGGGCAGTCATAGCAGCATTCGTGGGAGATCCAACCTACG360.1497566454511419No Hit
GGCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.1497566454511419No Hit
AGTCTAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC360.1497566454511419No Hit
GTAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.1497566454511419No Hit
CTAATTGGGCCTTCGTGGGCAGTTTATTAATATGTCTTCTGGCTAT350.1455967386330546No Hit
CAGCCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC350.1455967386330546No Hit
AAATATGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCA350.1455967386330546No Hit
ATACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.1455967386330546No Hit
TTTATGGGGATGGGCAGCGATGCTCTGAGCTACCCAGCATTCATTC350.1455967386330546No Hit
TGCCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.1455967386330546No Hit
CTAATGGGGGGGACACAGGGTAAACATCTGCCAGGCTCCACTTGAG350.1455967386330546No Hit
CAGCTTGGGACCATTGGGCATACAGGCCAGTGGGTCCTTGGAGTTT350.1455967386330546No Hit
ACTGATGGGGGGAATTCTGGACGTTAATTAGGGCTGAAAGCCCTAA330.13727692499688007No Hit
TACGTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA330.13727692499688007No Hit
TGGCACGTGGCCAGTTTGCCCCTATTAGGTGGATAGGCACTGAGTA330.13727692499688007No Hit
CCACTAGGGAACACAGGACTTAAAAGTCACATCATGTGTAGGAATT330.13727692499688007No Hit
CTCGCCGGGCAAATCAGGAAGGAAAAAACAAACAAAAAAGCTGTCG330.13727692499688007No Hit
GACTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.13727692499688007No Hit
GCGTGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT330.13727692499688007No Hit
TGCTTAGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGCC330.13727692499688007No Hit
TTTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.13727692499688007No Hit
CGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.13727692499688007No Hit
TCAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.13727692499688007No Hit
TATCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA330.13727692499688007No Hit
TAGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA330.13727692499688007No Hit
ACGGTCCGGGGAGCACTTGGGAGTGTGAGGCCTTCCTGGCTGCTTC330.13727692499688007No Hit
AGCCACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC330.13727692499688007No Hit
TACGCCGGGGAACACAAGTGATCCTGACATGAGACGGGAGATGGAG320.1331170181787928No Hit
AGAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.1331170181787928No Hit
AGACAAGGGGTCTTTATGAAGACCGGAGTTAATGGTGTCTTTAGAA320.1331170181787928No Hit
GCAAATGGTCAACATATCTTATTGACCCAGATATATTTTGATCAAC320.1331170181787928No Hit
TAATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA320.1331170181787928No Hit
GGCCATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC320.1331170181787928No Hit
CAATCAGGCATGCTATTAATGATATTAAAATCCCAACTATACCAAA320.1331170181787928No Hit
TTACCAGGGGATGCTGATACCTGGCCATTTTTTCTCATCTCAAAGA320.1331170181787928No Hit
CATCGAGGGAGAGCGCGGGACGTCTGTCTTCGAGTCCGAACGTTCG310.1289571113607055No Hit
GAGAATGGGTGCAGAGGACAGGGCCCTCATAGGATTTCAGCAGGCA310.1289571113607055No Hit
CTGTGGGGAAGATTGTGTGCAGCTACTGTACACATAATGTCCTGTC310.1289571113607055No Hit
TTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC310.1289571113607055No Hit
CTTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.1289571113607055No Hit
AATGCTGGGGGAAGGCGTGCGGCGAGCGTTGGACTTCGCTGTGAGC310.1289571113607055No Hit
GGCGTGGGGGTGGCCGCGGCGCGGGAAGGACAGTGAGCGGCCGCGA310.1289571113607055No Hit
TTTTACGGGTAATTTAATTGAATTATGGACTGTCCAAAAAATAAAG310.1289571113607055No Hit
GTCTTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC310.1289571113607055No Hit
ATAACAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC310.1289571113607055No Hit
CGCTAAGGGTGCTGTCCCTGGGTCAGCCTTCCATTCTGCTTTCCTG310.1289571113607055No Hit
CTATGGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.1289571113607055No Hit
GCAGAGCGGCATCCGCCAGACCTTTGGCTCCTCAGGAGCTGACAGA310.1289571113607055No Hit
TAAAGCGGGTGGGGATTGTGGTGAAGGGAGGGACTGGGGAGTCAGA310.1289571113607055No Hit
CTACACGGGGCTCTTTACTCCTGGGGAACAAACACTTGTGGGTTTG310.1289571113607055No Hit
GTAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA310.1289571113607055No Hit
TGACGCGGGAGGGACCAGTTCTTCTCTGTACAAGGATTTGTCCTAA310.1289571113607055No Hit
TAATATGGGGGGGCAGACAACATGGCGGCGTCCGTGCTAGGCTCGC300.12479720454261825No Hit
CCAGCTCAGATCTTGCTTAGATGGCAGGTTCAGCGGAAAGTGATCT300.12479720454261825No Hit
ATATTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA300.12479720454261825No Hit
AGATTTGGGGACGCTCTTCCGATCTTCATCAGGGGGTGCAATCTCA300.12479720454261825No Hit
TTTAGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC290.12063729772453097No Hit
ATTTACGGGGAAGTATTTTTCTTTGCAGGATTCTTCTGAGCGTTCT290.12063729772453097No Hit
TACAGTGGGACTACCATTGCCAAATTGTATATGAGATATGAATCTT290.12063729772453097No Hit
GAAAACGGGACTTGTGAGGATCTCAAAGCTCACACCACCTTCCAGA290.12063729772453097No Hit
AGCTGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAATGG290.12063729772453097No Hit
TCGCTAGGGGGGATCAAATTGTGTTTCTTAAAAAATGAAAAGAAAA290.12063729772453097No Hit
CTCAGGGGTCTCTAGCTACCCACAAGGGAAGTGTATAGCATAAAAA290.12063729772453097No Hit
TGCCACCACACTCCTATTGTACAAAAAGGACTACGATATGGTATAA290.12063729772453097No Hit
CAACGCGGGCGGCATTCAGAGTACGCTGATCGGCTTATGACGTATG290.12063729772453097No Hit
TGTCCTGGGGCCGCAGCCATCTTCCAGTAACTCGCCAAAATGACGA290.12063729772453097No Hit
ACATGATGGCCAAAAAACACCTGGAGATCAACCCTGACCACCCCAT290.12063729772453097No Hit
TACAGCCGGGTACCATTTATTATCGCGGCCCTAGCAATCGTTCACC290.12063729772453097No Hit
TACTCGGGGGGGAAGTAGAACGGTGGCGGCGGCGGTGACTCTGGCA290.12063729772453097No Hit
TGCGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.1164773909064437No Hit
AATAGTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.1164773909064437No Hit
TGCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.1164773909064437No Hit
TTCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.1164773909064437No Hit
CCATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.1164773909064437No Hit
TACATGGGCCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGATG280.1164773909064437No Hit
TTGCATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC280.1164773909064437No Hit
CAACTAGGGAGGAGAGGGAAGAACTGAGGTCCAGGCTTTTCCCTAT280.1164773909064437No Hit
TACTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.1164773909064437No Hit
ACAATCGGGAATGATCCCGCGGTGTAGTAATTCTACGGAATGCACG280.1164773909064437No Hit
CACACTGGGGATCTTTTGTCGGGAAGACTAATGAATGCAAAGAGAC280.1164773909064437No Hit
GACCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA280.1164773909064437No Hit
ACCTTGGGGGTGGAGATGGATGAGACAGACCGAGAGGTGGAGTACT280.1164773909064437No Hit
TGATTTGGGAGATCTAAGCCTCATCCTGACATCCTGCCCTCTGTGC280.1164773909064437No Hit
CGCTTAGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCA270.11231748408835641No Hit
ACCAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA270.11231748408835641No Hit
CGACCTGGGCTATGTCCCCAATGCCCACCCTCTTGTTTTTTAAGGG270.11231748408835641No Hit
AGTTTGGGGCATGTTTTCTCATGCTCTAATGTAAATGACCAAAATC270.11231748408835641No Hit
AAATGCGGGGATCTAGCAGCGGGTATGGCCTACCCATTCCAACTTG270.11231748408835641No Hit
ATCTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA270.11231748408835641No Hit
ATATGAGGGCAATTTGGTCTCAAACAGACAGCAAAGCCTTTACAAC270.11231748408835641No Hit
TTCCACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA270.11231748408835641No Hit
GTATCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA270.11231748408835641No Hit
GCCTACGGGGTGGTGACTATGAGATCCATGTGATGACGTTGCAGTC270.11231748408835641No Hit
AATCATGGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGC270.11231748408835641No Hit
GCGATTGGGGGCTCCATTCATTGACTTGGGGAACCTCAGTATTTGT270.11231748408835641No Hit
CCACACGGGGACGCTCCTAGAACTCTTCAAACCGATCTCTCGTCGA270.11231748408835641No Hit
TGTATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC270.11231748408835641No Hit
CTCAAAGGGACCAGAACAGCAGTTTGACAAAAGTATACAGAAACTC270.11231748408835641No Hit
CGTTAAGGGATAGCACTTGTTATTGCATCAATCATAATCCAAACTC260.10815757727026916No Hit
TCAAAGGAGGGAATTGGGGACATTCAAATGAGCATCCTAGTCACCG260.10815757727026916No Hit
AATACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC260.10815757727026916No Hit
TAAGCTGGGAATCGCTCTTGCCGTGCGAGATGCTAGCAAAAAGGTG260.10815757727026916No Hit
CTGAATGGGGGACGGCTCAGAGCAACAGTGCCAAGGAATGGCTGCA260.10815757727026916No Hit
TCACTTGGGGCAGGAGAACGCGCGGACGTTCTCAGAACGCGCCTCT260.10815757727026916No Hit
GCAAGCGGGTAGGAGGCTGCTGACCTCCAACAGGAATTTCACCACT260.10815757727026916No Hit
CCAAGAGGGAGTGTGTGAGAGGTAAGCAGCTAGCTGCAGCCAAGGT260.10815757727026916No Hit
ATTGCTGGGATTTTTTTTCTATCCAAAATTGGGGTACTACTTGTTT260.10815757727026916No Hit
CTACGAGGGGTTCTGTTCTGCACCAACTCAGAGTCTTGTTGGAGCT260.10815757727026916No Hit
CAATCAGGGTAGCTTCTCAGAGGAAGCAGTGTTGCTGTGGTAAGGG260.10815757727026916No Hit
GGCAATGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG260.10815757727026916No Hit
CCAATAACAACAAGGAGAAAACCAAGAGCGCATCAGAAACCAGCAC260.10815757727026916No Hit
TCACGGGGATGATTTCACTATAATTCAATTACACTATTAACCCTTG250.10399767045218186No Hit
TTCCCGGGATGCCACAACTAGATACATCAACATGATTTATCACAAT250.10399767045218186No Hit
AGCGATGGGCGATACATACTATGTAGTAGCCCATTTCCACTATGTT250.10399767045218186No Hit
ATTTGCGGGACATGATCTAGGAGGCTGCTGACCTCCAACAGGAATT250.10399767045218186No Hit
AAGCAGGGGCTTTTACCACATACATTTACACCTACTACCCAACTAT250.10399767045218186No Hit
TTATTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT250.10399767045218186No Hit
TTCAGCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA250.10399767045218186No Hit
AGTTATGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT250.10399767045218186No Hit
GGGTAAGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTT250.10399767045218186No Hit
TTGCTCGGGGGTGATCATCTAGGACCAGGGCGACCGGGGCGCGCGA250.10399767045218186No Hit
TCGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA250.10399767045218186No Hit
ATCGCTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA250.10399767045218186No Hit
TGTCATGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCG250.10399767045218186No Hit
AACACTGGGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAG250.10399767045218186No Hit
TGGAACTCACTTTGTAGAACAGGCTGGCCTCGAACTCAGAAATCTG250.10399767045218186No Hit
GCGACCGGGGGCCCCTTGCGGGCCTTCACGCTAAGTGAACAGAGCA250.10399767045218186No Hit
CAATAAGGGGTGGGACTCACCTTTCCTTTCTCTCTTTTCTCCTTCC250.10399767045218186No Hit
GTCGATGGGAGGAGCGCGGGGGCCGGCCGTGAAGAGTGCTGGAGTT250.10399767045218186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)