FastQCFastQC Report
Sat 31 Dec 2022
SRR5843782.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843782.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65104
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1110.17049643647087737No Hit
TACCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA870.13363234209879576No Hit
TAACGGGGGAAGAAGTTCCCTGATCTACTTCCCTGCAGAAGAACAC790.12134431064143524No Hit
CATAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA790.12134431064143524No Hit
AAGCCTGGGATACGTAAAACTCTCTCACACAGGAAATAGACAGTTG790.12134431064143524No Hit
CACATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.11980830670926518No Hit
TGCCATGGGAGGCGAGGGATACAACCAGGCAAAGGACTTAAATCTG780.11980830670926518No Hit
AAGTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.1182723027770951No Hit
AGCAAAGGGATGAAGGGTTAGAAAAACCCGAGTCTCGAACCTCCAT760.11673629884492505No Hit
CTACAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC760.11673629884492505No Hit
TTTGGTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT750.11520029491275498No Hit
TACACAGGGACACTGGAGCCGGCTACCTCTCCTGTGCCTACCACTC750.11520029491275498No Hit
TGGCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA740.11366429098058492No Hit
GCTACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA740.11366429098058492No Hit
ATCCGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC740.11366429098058492No Hit
CTCTAAGGGGACATCCGGGACTCTAAATGGAAGCTTATTGCAGACA740.11366429098058492No Hit
CCTACAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA730.11212828704841485No Hit
TCAACCGGGGATCTCGGATTGGGATTCCATCACCGTGTCCACACAA730.11212828704841485No Hit
TTTCGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT730.11212828704841485No Hit
GCTGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.11212828704841485No Hit
GATCTAATGGGGAGATACTAAAATTATCTGTGGATTGCCGGCATTG720.11059228311624478No Hit
AATCTTGGGACAACCTGAGTTGAAGCCAGTGCTGTGAGTGGGGACC720.11059228311624478No Hit
GCCATAGGGGAGGGGTGGCATGCAGATCTTCGTGAAGACCCTGACT720.11059228311624478No Hit
GCATTAGGGGGCCGCAGAAAGGGCAGACCCGCAGCGCGCTCCATCC710.1090562791840747No Hit
ACACATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA710.1090562791840747No Hit
TCTGGTGGGCAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC710.1090562791840747No Hit
TTCACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA700.10752027525190463No Hit
CGTTACGGGACATGACAATGAAGGGTGAGGAGGCCCACAGCACAGC690.10598427131973459No Hit
GCATCAGGGGACTGACAGCGTGGAGTCACGCCATGGAGGACCAAGA680.10444826738756452No Hit
GCTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.10444826738756452No Hit
TTAGTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT680.10444826738756452No Hit
AAAACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC680.10444826738756452No Hit
GTCTAAAGGGTGGTGTCTTGGGGCTACTGCTTGCAGGTTTTGTGTG670.10291226345539445No Hit
CAAGCTGGGGGCTGAGAGACACTGAACACCTTTGCCATGTGTTTCA670.10291226345539445No Hit
TTTAGAGGGGATCGCAGCCGCCAAAATGAAGTTCAATCCCTTCGTG670.10291226345539445No Hit
ATCTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.10291226345539445No Hit
CTCTCACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT670.10291226345539445No Hit
CTCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.10291226345539445No Hit
GATTTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT670.10291226345539445No Hit
AACGTTGGGGTGTACATGAAGGTGGACGGGGAGGTGCTGAGGACTA660.10137625952322438No Hit
TTGCAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA660.10137625952322438No Hit
TGTACGGGGAAATACATAAAATGTTTGCAAAGCCTTCAACAAAAAC660.10137625952322438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)