FastQCFastQC Report
Sat 31 Dec 2022
SRR5843781.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843781.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61969
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1180.19041778953993127No Hit
CAAATAAGGGATCGTCGCTCTTCGTTGTTCGTCGACTTCTAGTGTG780.12586938630605624No Hit
TGGCAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA750.12102825606351564No Hit
ATCCGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC750.12102825606351564No Hit
AGCAAAGGGATGAAGGGTTAGAAAAACCCGAGTCTCGAACCTCCAT750.12102825606351564No Hit
TACCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.11618712582097501No Hit
GATTTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT710.11457341574012812No Hit
CACCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.11134599557843439No Hit
TTCCTAGGGGCTTTCCGATCCGCCATCGTGGGTGGAGCCGCCGCCA690.11134599557843439No Hit
TTTCGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT680.1097322854975875No Hit
CAAAAAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG680.1097322854975875No Hit
GCAAGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.1097322854975875No Hit
TGTACGGGGAAATACATAAAATGTTTGCAAAGCCTTCAACAAAAAC680.1097322854975875No Hit
TGAAGCGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT670.10811857541674064No Hit
CAGGTAGCCCAGGCTGGCCTCGTGTGAACTCCTGATCCTCTGGCCT670.10811857541674064No Hit
AAGTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.10811857541674064No Hit
ATTTGCGGGGTCTGCATGTATATCTGTACACCGAGGAAGCCAGAAA670.10811857541674064No Hit
TACATAGGGGAGAAAGGGCAGACCCGCAGCGCGCTCCATCCTTTGC660.10650486533589376No Hit
GCTAGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC660.10650486533589376No Hit
CGTTACGGGACATGACAATGAAGGGTGAGGAGGCCCACAGCACAGC660.10650486533589376No Hit
GGCTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.10650486533589376No Hit
TTAGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10489115525504687No Hit
TCTGCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC650.10489115525504687No Hit
CACCCCATGCTTATCTGGACATTGAAGCTTGGAAAGCCAGTGGTGA650.10489115525504687No Hit
TGCCATGGGCGAGACTTTCAGTGAGCTGTCTTAAGGCTTTTTGCCT650.10489115525504687No Hit
GCATCAGGGGACTGACAGCGTGGAGTCACGCCATGGAGGACCAAGA640.10327744517420001No Hit
TGATTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10327744517420001No Hit
CTCGTCGGGGGACATGACTTAGAAACTGCTCTGGAGCACTGCTTGC640.10327744517420001No Hit
CATATTGGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATA640.10327744517420001No Hit
AGTACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10327744517420001No Hit
TAACGGGGGAAGAAGTTCCCTGATCTACTTCCCTGCAGAAGAACAC630.10166373509335314No Hit
GAGCCTGGGGCTTCTGAAGTGATTTCCGCTCCTTTTTCTTGCGCGG630.10166373509335314No Hit
TCAAAAGGGAAATACTAAAAAGAAGGAAAGCTGGAAGAAAGGATGG630.10166373509335314No Hit
TACACAGGGACACTGGAGCCGGCTACCTCTCCTGTGCCTACCACTC630.10166373509335314No Hit
AACTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10166373509335314No Hit
GATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10166373509335314No Hit
GCTACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10166373509335314No Hit
TCTCATGGGGATTGATTCAAAGCAGCGGATGCTGAGCCTTGGTCTG630.10166373509335314No Hit
CAAGCTGGGGGCTGAGAGACACTGAACACCTTTGCCATGTGTTTCA620.10005002501250625No Hit
TCAACCGGGGATCTCGGATTGGGATTCCATCACCGTGTCCACACAA620.10005002501250625No Hit
TAGCTCGGGATAGCACCGCTCAGCTGTCCTTGTAAAACAGTGCACA620.10005002501250625No Hit
TTTCAGATGGGGATGGGGAAGACTGGAGAAAAGATAGTTTAAGGAA620.10005002501250625No Hit
CTCTCACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT620.10005002501250625No Hit
AAAGCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC620.10005002501250625No Hit
GTGCCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA620.10005002501250625No Hit
CAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC620.10005002501250625No Hit
ATCTAAGGGATAGAAAATTGTATTATGCATGCCGTTGCATTCGCTG620.10005002501250625No Hit
CTACACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10005002501250625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)