FastQCFastQC Report
Sat 31 Dec 2022
SRR5843780.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843780.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69993
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAGTGGTCTAGTGTGGAGACGAATTGCCAGAATTATTAACTGCG740.10572485820010571No Hit
CTATGTGGGAAAGTAGGGGCAGCGGGTGACGGTACGATGGCTGCGC730.1042961439001043No Hit
CTCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.1042961439001043No Hit
ATCTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT730.1042961439001043No Hit
CAGTATGGGGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTG710.10143871530010144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)