FastQCFastQC Report
Thu 19 Jan 2023
SRR5843772.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843772.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36446
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATGGCC200.001239820640.09
TTTTGGA200.001239820640.013
ATGGGGT200.001239820640.05
AACGTCC352.949073E-740.021
TCCTCAC352.949073E-740.039
GCCTTGG200.001239820640.02
CAGCATC200.001239820640.08
CGATAGG200.001239820640.01
TCAAGCA200.001239820640.013
TGACCCA257.646743E-540.011
GTACCTT352.949073E-740.031
ACGTCCT352.949073E-740.022
TTCAACG352.949073E-740.018
ATGACCC257.646743E-540.010
CCACGAC352.949073E-740.011
TACGGGA401.8417268E-840.04
ATGGTTT200.001239820640.029
TCGAAAG200.001239820640.036
TTTTCGA200.001239820640.033
TTCGAAA200.001239820640.035
Produced by FastQC (version 0.11.5)