FastQCFastQC Report
Sat 31 Dec 2022
SRR5843766.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843766.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67138
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC970.14447853674521136No Hit
TGGAACGGGCGGAACCATGCCTTTGCGAAACATCTTCAAAAACTGC870.12958384223539574No Hit
ACGTATGGGCTGGAGCAGGTGCAGAGCCGGCGGGGGAGGGGTGCCA810.12064702552950637No Hit
TAACATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.11617861717656171No Hit
TTTAATGGGGTAGTTGCCCGGCACTGAGCGAGCGGCTGCTACGGTC780.11617861717656171No Hit
AATGTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC780.11617861717656171No Hit
TGTGGGGGGGAGAGCAATTCCGATGACTGTCCACAATCTGTACCTT780.11617861717656171No Hit
TTTGTCGGGACCTTTTGGCCAAGAAGTTTGAGATTTTTTCAGCTAA770.11468914772558014No Hit
TTCAATGGGGATCTTCCTAGGGGGGGAATTCTGGACATTAATTAGG770.11468914772558014No Hit
ATAACTGGGATCTGAGGATTGGCTCACACCAAGCTCTGCTAACACT720.10724180047067235No Hit
TGAACTGGGTACCGAGTAGAACTTGATTTCCCTCCCTCAACTGTCT720.10724180047067235No Hit
TTGGAGGGGTCCATGATGGTCTGCTGATTCTTTGACACGGTCTCAC720.10724180047067235No Hit
TACAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTTC710.10575233101969078No Hit
CTCTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.10575233101969078No Hit
CACAGTGGGGCTCTTTCCTTTTGCGGCCATCGGTGGATCGCAGCCG700.10426286156870923No Hit
TTCCCCGGCTGTAGGTTTTGAAATCAGGTGTTTTGAAAGCTCAGTT700.10426286156870923No Hit
CCGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.10277339211772767No Hit
TACCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.10277339211772767No Hit
ATTATTGGGTCCCTTTCTCTTAGTCCTCTGTTACTTCCAGGAAAGC690.10277339211772767No Hit
CGGCCAGGGCATCTCAAACAATCACAAAACAACCCACCTCATCGTT690.10277339211772767No Hit
GACGCAGGGGCAGGTCAGAATGATCTTAAAAGACATGAAAGAATTC690.10277339211772767No Hit
TAACACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC690.10277339211772767No Hit
GCATTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.10277339211772767No Hit
CAACCTGGGTCTCTAACCGGGGGGAATTCTGGACATTAATTAGGGC680.1012839226667461No Hit
ACTCCTGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC680.1012839226667461No Hit
TTTCTTGGGGATGGTACGGACGAACAGACGCAAATACTGCAGCCCT680.1012839226667461No Hit
AATCCAGGGGGGATTCATCTTCCTCTTAGCTTTTTGAGGAGGCAAT680.1012839226667461No Hit
CTTACAGGGGGGTCATAGTAAAGAGACTGGTATTGCCCAGGAAATG680.1012839226667461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)