FastQCFastQC Report
Sat 31 Dec 2022
SRR5843765.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843765.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64818
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTACAGGGACCCTGTCTCAAAACAAACAAACAAAATCAGCAGGAG890.1373075380295597No Hit
AAAACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC860.1326791940510352No Hit
ATGCAAGGGAGTGACAAAGACTAGCAAGGAGAAATCCTGATACAAC750.1157085994631121No Hit
TTGGAGGGGTCCATGATGGTCTGCTGATTCTTTGACACGGTCTCAC750.1157085994631121No Hit
TGTCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA750.1157085994631121No Hit
TGGAACGGGCGGAACCATGCCTTTGCGAAACATCTTCAAAAACTGC740.11416581813693727No Hit
CTAGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.11262303681076244No Hit
CAAGCCCGGGACTGAGCGAGCGGCTGCTACGGTCCACGCTTCTTAC720.11108025548458762No Hit
GCTGCTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA720.11108025548458762No Hit
GGTGCCGGGAAGATGAATCAGGTGGTAAAATGGCCGTGGTACAAGC710.10953747415841279No Hit
CAACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT700.10799469283223795No Hit
GCACGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC700.10799469283223795No Hit
TTTTATGGGGGGGCTGGACAGGATGAGGTCACCATTGGGCCTGAGG700.10799469283223795No Hit
TATCGAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT700.10799469283223795No Hit
TATGCCGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC700.10799469283223795No Hit
ATAACTGGGATCTGAGGATTGGCTCACACCAAGCTCTGCTAACACT690.10645191150606313No Hit
ACGTATGGGCTGGAGCAGGTGCAGAGCCGGCGGGGGAGGGGTGCCA690.10645191150606313No Hit
ATTGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA680.1049091301798883No Hit
CGGCCAGGGCATCTCAAACAATCACAAAACAACCCACCTCATCGTT680.1049091301798883No Hit
CTGCCCAGGCTAACCTGCGCCAGGAGCTGAACGACTCGCTCCAGGT680.1049091301798883No Hit
GCATTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.1049091301798883No Hit
TTCAATGGGGATCTTCCTAGGGGGGGAATTCTGGACATTAATTAGG680.1049091301798883No Hit
AACTAGGGGGCCGGTGGAGGAGTCTGGAGACGACGATCAGAAATGG670.10336634885371347No Hit
GGACACACGGGGACATCTGACATCCAGTGGTTTCAGGAGGCCTATG660.10182356752753866No Hit
CGGTTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC660.10182356752753866No Hit
TTTGCAGGGGGTGAAGTCAGAGTTTAATAAAAGCTTCCAGCAGCAG660.10182356752753866No Hit
CATCCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC660.10182356752753866No Hit
GGCACAGGGGACCTCAGCCGCGTCATGAGCCTCACCCTCGTCACTG660.10182356752753866No Hit
CGGTTCGGGGAAGAAGGGAGGCTTTTTTGTTTAGGTTCTTGATTTT660.10182356752753866No Hit
TGAACTGGGTACCGAGTAGAACTTGATTTCCCTCCCTCAACTGTCT650.10028078620136383No Hit
GTAACGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA650.10028078620136383No Hit
GGGCCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10028078620136383No Hit
CGTACTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA650.10028078620136383No Hit
TAACCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10028078620136383No Hit
GTAAATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA650.10028078620136383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)