FastQCFastQC Report
Sat 31 Dec 2022
SRR5843758.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843758.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57275
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.12396333478830206No Hit
ACGAATGGGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGG660.11523352247926669No Hit
TAATCAGGGACAAGGTAAAGCTATACTGAGGTTCCATTTTTCCCTT630.10999563509384548No Hit
CTACACGGGGACTGCACAAGGATTCTGACCAGCCAGCTGGACTTTT610.10650371017023134No Hit
TTGCTCGGGATCCGATTGTATTCTTTGATTTAATAGTCTCTGCTTT600.10475774770842426No Hit
AAAAAAGGGGGGCTTTGTCTCACCCAGTTGGCTGAATGGAAAAGAG600.10475774770842426No Hit
CACTAAGGGATTTCTTTTACAATAAGAGACTGAAGCGAATTGTCTT600.10475774770842426No Hit
ATTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.1030117852466172No Hit
TTGCGTTGGGGTTCCCTAACCATTAAATCTTGTTGGGTTTGGTAGG590.1030117852466172No Hit
TCTTCAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT580.10126582278481014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)