FastQCFastQC Report
Sat 31 Dec 2022
SRR5843741.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843741.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45755
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAAGGGGGAGATTGAAACTAAACTAATTAAGGGTGATATTTAT1140.2491530980220741No Hit
TATCAAGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG760.1661020653480494No Hit
CGTAACGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT710.1551742978909409No Hit
CATTAAGGGCAAAACCCTGAATTTAAGAGTAAACAAACTGAGAAAA690.15080319090809746No Hit
GGTCTAGGGAACTTTACTTAGAGGTAAATCCCTCTTCCCCCAATAT690.15080319090809746No Hit
TACTATGGGGGCAGTTTGTCTTCGCTGATCGGTGAGACTTCGAGCA680.14861763741667577No Hit
TACTTAGGGCAACAAGGGCAGCAACGATGCGTACCACAGCCGCGCC670.1464320839252541No Hit
CTTGGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.1464320839252541No Hit
TTGACAGGGACACTCGCTGTTGAGATACTAAAATTATCTGTGGATT650.14206097694241065No Hit
TACCCTGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC650.14206097694241065No Hit
TTAAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA650.14206097694241065No Hit
GCTGCCGGGCCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGAT640.13987542345098897No Hit
CATAATGGGGGCCTCAGGTCCAGGCCCAAAGCCAAGTGAGTGCTCT630.13768986995956725No Hit
ACTAATGGGGCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCCA630.13768986995956725No Hit
CACTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.13768986995956725No Hit
CATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.13550431646814556No Hit
TATAGTGGGGGGGTTCAAGGCAAAGATGGGGAAAGTCTGGTTTGAA610.13331876297672385No Hit
GCAAACGGGGCTTCTGAAATCCCTAACCTGGGCTTCACTTCATTCT610.13331876297672385No Hit
GTCTCTGGGTTCCGCTGGTGGCCGGAAGTTGCGGGTCCTGCAAGTA610.13331876297672385No Hit
TACGCTGGGATGCGCAGTTGGCCACGACGTGGGTGGAACGCTCAGA610.13331876297672385No Hit
CTATTCAGGGGGCAGGCAACGCTGTGGGGATCGGGCTTCCACTCCA600.13113320948530216No Hit
CCTACTGGGGTGCCATCCCGGTCCATGATGGTCTGCTGATTCTTTG600.13113320948530216No Hit
GTTACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.13113320948530216No Hit
GCGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC600.13113320948530216No Hit
GTAGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.13113320948530216No Hit
GCCACAGGGGTTTGTTAGAGGTGCGGTGACATGGCTCCTCCGGTTC600.13113320948530216No Hit
TAAGCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC600.13113320948530216No Hit
TCTCTTGGGAAGTTGCTGTTAATAGGCCTTTGGGTACCCTTTGCTT590.12894765599388044No Hit
TCTTAAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT590.12894765599388044No Hit
ATAGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT590.12894765599388044No Hit
ACGTATGGGGCCCAGCGTGTGGACCATCCGTGTCTCTTTCCAGCTT590.12894765599388044No Hit
TATCATCGGGTTGCGGGATAAATGAGTCTAATAGTTAAGATAGCCT590.12894765599388044No Hit
TTACCAGGGGGTGCGTGGCTGTGTTCCGACTTTCCGGGTAAAGATG590.12894765599388044No Hit
ATGCTTGGGGATCTTGTCCTGGGGCTGTTTGACCTCTGGCTTTGAG590.12894765599388044No Hit
TACCACGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC590.12894765599388044No Hit
AGCAATGGGAAATGAGAGGTTGAACCAGGCTTAAAGCAGACATACC590.12894765599388044No Hit
GCTTTTTTTGACCTTCTCCAGCAAGCAGATTGCACCAAAGCAAGAA590.12894765599388044No Hit
TGCCATCGGGGGGCGCCTGAGGCCTCACTTCCTGAGCGTCTGTGAC580.12676210250245876No Hit
ACGTAGGGGGCAGCGGAACGGGGTGACCCTGAGTATTGAGACCCTG580.12676210250245876No Hit
CTAACCGGGGGGGTGCATAGCCTGTGCTGTACACTGGCATTAACAA580.12676210250245876No Hit
TGACAAGGGCTCTCGAACCAGGCTGCTTCAGCCGTGAACAACGCCG580.12676210250245876No Hit
CATATCGGGGCCTTCGCCGTTGTGCCGAGCCCGCAGAGGAGTCGCC570.12457654901103705No Hit
AACATGGGGGCGCCGGGGAGGAGTCCCGGAGCCGAGCTGGAGCTGG570.12457654901103705No Hit
CAAAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.12457654901103705No Hit
GACCAAGGGGCCTTTTCCGAGTAACCGCCAAGATGGCCGAAGTGGA560.12239099551961535No Hit
GACTGAGGGATGGCGGCTTCTTCGGAGGATGACATAGACCGGCGGC560.12239099551961535No Hit
ACTCATGGGAGGAGGCAGGGTAGGGTGCCTCATTCCTCTGCCTTCT560.12239099551961535No Hit
TTGCGCGGGGATGCATGTGTTTGAATGCATGGCCCACAGGGAATGA560.12239099551961535No Hit
TCTTTAGGGCGCCAGCTAGCAGCGGTGGCGATGCGGCGGGCGTGAG560.12239099551961535No Hit
GCAACCGGGGATCACGCGCTGGAGGACTCTTCCGGGGCCGGGGCCA560.12239099551961535No Hit
CTCTTCGGGATCCAGAGGTCTCCCTCATAGGCCTGGGGAGAGATAC560.12239099551961535No Hit
AATAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.12020544202819364No Hit
CTGCAGAGGGTGCCTGCAGTGTCATCTGCAGATTTGCCTGGGACAT550.12020544202819364No Hit
TAACACCGGGAGTCTTGGACAGCCAAAGGGGACTTGAAGGAGACGG550.12020544202819364No Hit
CACTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.12020544202819364No Hit
GCATCTGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT550.12020544202819364No Hit
TAAGCTGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTC550.12020544202819364No Hit
TCTGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA550.12020544202819364No Hit
CAGACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.12020544202819364No Hit
GTTATCGGGTCTCTGAACGGGGGGAATTCTGGACATTAATTAGGGC550.12020544202819364No Hit
ATTTGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT540.11801988853677194No Hit
GGTTAAGGGCTGTATAAAGTCACAACTCCAAACACACAGGTCAGTC540.11801988853677194No Hit
GACTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.11801988853677194No Hit
GCTAATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC540.11801988853677194No Hit
TGCACCGGGATCTCACTATGGGACATCATAGTGTACACACAAGCAC540.11801988853677194No Hit
TCTTGTGGGGGAACAAAGGACTTGGGGGATGAGGAATGCTCTGGTT540.11801988853677194No Hit
CATATGGGGGAGCAGCCACAGCATTGAAAGTCTGTGGTTTCATTTC540.11801988853677194No Hit
TTTTACGGGGAGGCCGGAAAGCTTGCAGGTGGGGAAGATGGCGGAC540.11801988853677194No Hit
AAATCAAGGGAAATGGTCATCTCTTAGATTTGGGAGGAAGGAAGCC540.11801988853677194No Hit
GCCCACCACATATTCACAGTAGGATTAGATGTAGACACACGAGCTT540.11801988853677194No Hit
CAAGCAGGGATGTGCAAGAATTCCACCCAAGACTGTTAGGTCTGAC540.11801988853677194No Hit
GTTACGGGGGATCTGTTTATGGGGTATCAAATGTAAAATTAACCTA540.11801988853677194No Hit
GCCACGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.11801988853677194No Hit
AAGTCTGGGGGAAGTTCAAGGCTGGCTCTCGCTTTAGTGGGCGAGT530.11583433504535025No Hit
GCTCTAGGGACCACACTCCTATTGTACAAAAAGGACTACGATATGG530.11583433504535025No Hit
CATCGGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA530.11583433504535025No Hit
GATGAGGGGATCTCAGTTCGGGGAGGAGGCAGATGCGAATGAGGAA530.11583433504535025No Hit
ATCGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.11583433504535025No Hit
TACAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.11583433504535025No Hit
CGCCATGGGGGACTATAAAGAGGGCAGGCTGTCCTCTAAGCGTCAC530.11583433504535025No Hit
GCACATGGGGACTATAAAGAGGGCAGGCTGTCCTCTAAGCGTCACC530.11583433504535025No Hit
CAAGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.11583433504535025No Hit
TACCGTGGGGGTCACAGCTCCCTGCAGGTAGGGGGGCTCCCCCTCC530.11583433504535025No Hit
CTTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.11364878155392852No Hit
AGCAAAGGGTCTCAGCACGGGACGGCATTTGCAGCTTTTCAGTGAA520.11364878155392852No Hit
TTTGGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA520.11364878155392852No Hit
CGCAACGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG520.11364878155392852No Hit
TCTTTCGGAGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTT520.11364878155392852No Hit
AATCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.11364878155392852No Hit
GTAACAGGGCCGATCTATCATAGGGGGGAATTCTGGACATTAATTA520.11364878155392852No Hit
TCCAATGGGGGCAGTACAAGCTGTCATGGCGGCCCGACTGTTAAGC520.11364878155392852No Hit
TCTAATGGGTGCTATGTTGCCCTGGATTTTGAGCAAGAAATGGCTA520.11364878155392852No Hit
TCGCTCGGGACTGAATCACCTTGAGGGTTAGGTATCAGCATAATTT510.11146322806250683No Hit
CTGAGGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC510.11146322806250683No Hit
AACTGTGGGGAGGAGAGTACTGAGAAGCGTCGGGGAGCGCAGGCCC510.11146322806250683No Hit
CCACGTGGGCTCGGCAAGATGGCGGCCGCGGCCACCGGCCTGCGCC510.11146322806250683No Hit
TTCAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.11146322806250683No Hit
ACTCTTGGGAGGACTGAATATTCGGTGGCAGTATGGGATTTCTAAA510.11146322806250683No Hit
TCACCCGGGGGGCCCAGAGCCAGGAGGGCTGGGGCCGAGAGCGAGA510.11146322806250683No Hit
CAAAACGGGCGATCTAGATTAGGGGGAGTCTTGGCTCCAAGATGAC510.11146322806250683No Hit
CAGATAGGGGAACACTGCATAACTCGCTTCTTTGAGGAGTGTGACC510.11146322806250683No Hit
CTCGCAACGGGACATCGACATCCGGGAGTCTGATTGCCTGTGGCTG510.11146322806250683No Hit
GGGCCTGGGCAGTGTAGTCTTAGCAACTGGTGTATATTTTTATATG510.11146322806250683No Hit
ATTAAGGGCATCCACAAAGCCAGGCTCCCAGCTTCTAAATGTGTAC510.11146322806250683No Hit
ACTTCTGGGGCTCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTG500.10927767457108513No Hit
TATTTCGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT500.10927767457108513No Hit
TTACCTCGGGCTCCTCTGATGGTCAGTTTGCCCTCTCGGGCTCCTG500.10927767457108513No Hit
GATTTAGGGGTATAGCCATTCCACTATGAGCTGGAGCCGTAATTAC500.10927767457108513No Hit
AATATAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT500.10927767457108513No Hit
GTTGCTGGCTGCTCTGGAAACATACATACCCTGGATTCTAATATTT500.10927767457108513No Hit
GGTCAGGGGTTCCCCAGGCCTCTGCTCTTGACCTCACCCGGCAGCT500.10927767457108513No Hit
GGCGCCGGGGAGAAACCGAAGTGTAGGTGACGGTTCCGAGACATCG500.10927767457108513No Hit
GTCACTGGGGACTTCCAAGATGGCGGCGACAGCAGCCGTGTCTGGT500.10927767457108513No Hit
TCTTCAGGGGCGGCCCGGTGCTCAACCAGCTGCTCGCACCTTCCGC500.10927767457108513No Hit
AGCATTGGGGCACTGAGTTGAGCGAATTGTTTTACAAGAGGAAAAG500.10927767457108513No Hit
TGGAGAGGGCTTCCTCGGCGCTGCCTACGAGGTGGCTGCCATCTGT500.10927767457108513No Hit
CATTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.10927767457108513No Hit
CGTCTTGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT490.10709212107966343No Hit
TCCAACGGGGTCCCCATCCAGGAAGTACCTCCCAGTGACATGAGCT490.10709212107966343No Hit
TATTACGGGAGCTGCTTGCTGACCAGTGTTTTTGTTTCCACTCAGC490.10709212107966343No Hit
CTCTATGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCA490.10709212107966343No Hit
CAACAAGGGCTCCCACAACTCTGGGAAGAACATACGGCCATTACAC490.10709212107966343No Hit
TTTAGGGGGGCCCATTTCCACTATGTTCTATCAATGGGAGCAGTGT490.10709212107966343No Hit
AAAAATGGGATTTACAGTTGGTGGTCTAACCGGAATTGTTTTATCC490.10709212107966343No Hit
TTACGCTGGGAGTGCGGGCGCGGGGTCGCGCCGAGCGGGTTGGAGG490.10709212107966343No Hit
GCGAATGGGGTCATCTAGAGGCTTGATTCCCAAGCTCAGCACTTGG490.10709212107966343No Hit
TTACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.10709212107966343No Hit
TCGCTAGGGGATTTAGAAAAATAGAGGTGCACAATGCTCTGGCCGC490.10709212107966343No Hit
ATGGCTGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC490.10709212107966343No Hit
TCCTATGGGCCGAGCCTGTGTTCTAACAGCCGCGTTAGCTTCAGGC490.10709212107966343No Hit
TGCACGGGGGAGGCGGTCTAGGTCTACCTCCAGAGAGCGGCGGAAG480.10490656758824171No Hit
CCAAACGGGGCATCAATCATAATCCAAACTCCATGAAGCTTCATAG480.10490656758824171No Hit
GTCGCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.10490656758824171No Hit
AAGCTCGGGGTGCTCGCTTCGGCAGCACATATACTAAAATTGGAAC480.10490656758824171No Hit
CATCCTGGGGGAAAGCGCTTAATGCATCCGGGCTTGGGGTCACAGA480.10490656758824171No Hit
AATGCTGGGGGGTCGCGCCGGCCCAAGATGGCGTGGTCCGCGTCCG480.10490656758824171No Hit
ACAATAGGGGACCCTGGAGATCACCCGGGTTTGCCCGCCTCCCATC480.10490656758824171No Hit
AGTACGGGGTGGGACTGCAGGAGTTCTCTGGTGGCCTCGTGCTGTC480.10490656758824171No Hit
TGGCTCGGGGGCTAATGGAGGTGCTGCCTGAAGCCAAAAAGTACAT480.10490656758824171No Hit
TTCCCAGGGATTTGAAATGTGGTTTTTGTTTTATTCTTGCTCAATT480.10490656758824171No Hit
ATCAGCGGGGACTTCAAGGTGGGTGGCCAGGGCAAGGCGGCGAAGA480.10490656758824171No Hit
TGCACAGGGGTGACAAATTTAGACATCCTCTTCTCCATATCCAGAA480.10490656758824171No Hit
CAAACAGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG480.10490656758824171No Hit
ATACTAGGGCTTTCGGAGCTGTGCGGCATTCTGAGCAGGAATGGCA480.10490656758824171No Hit
AGCAGTGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAGA480.10490656758824171No Hit
CAAGTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10490656758824171No Hit
TCGCACAGGGGGGTTTTACAACATCTGACATTTCCAGGCTTCTGAA480.10490656758824171No Hit
CTACAGGGGACTCTCTTTCTGCCATCTTCCCTCGCCGCCACCATGG470.10272101409682002No Hit
TACTTAGGGGGGGCGGGAGGCTAGGTACGGCGACAACAGGGGCGTC470.10272101409682002No Hit
CGGTAAGGGGATTTCCCTGTGTGTTTTAATTCCTCTGGATACCAGA470.10272101409682002No Hit
CTCTAAGGGGCCCGCTTCCGGGTTCCCGGCAGCCCCCGCGGCGGCC470.10272101409682002No Hit
ATGGCTGGGTCGCAGGGGGGAGCCTCCATCACACAGAGGCAGGACC470.10272101409682002No Hit
GCCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10272101409682002No Hit
GTAACTGGGGATTGGATTTGTCCAAACAGGTGCTGGCCCAGCATGG470.10272101409682002No Hit
ATCGTAGGGGGGGTCACGTAGCTCAGGTCCCTGGCTTGGGTCACAC470.10272101409682002No Hit
TGCGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10272101409682002No Hit
ATAGTTGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC470.10272101409682002No Hit
TTCGTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA470.10272101409682002No Hit
GGCGTGGGGAAATGATCTCCAGCTATACTATGAGCCTTAGGCTTTA470.10272101409682002No Hit
TGTATAGGGACACACGGAACCGGTGAGCAGAGCAGCGCCGGCGCAA470.10272101409682002No Hit
AGAGCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA470.10272101409682002No Hit
CGTGCCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA470.10272101409682002No Hit
CGACGTGGGGCTCTCTCTTTCCGGTGGAGGAGTCTGGAGACGACGA470.10272101409682002No Hit
CAGCAGGGGGGCAGCAAAGGCTCCCACGGGCGAAGTGAATACCATG470.10272101409682002No Hit
TGCCACGGGATGCCACAACTAGATACATCAACATGATTTATCACAA470.10272101409682002No Hit
ATTTGAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA470.10272101409682002No Hit
TACACGGGGGGGAATTCGAGCTCGCATTTTGAAAATTCTATGGAAG470.10272101409682002No Hit
GTTACAGGGGGAATTCTAAGTTATTAATTGTAATCTGTAGGTGACC470.10272101409682002No Hit
TGCCTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA470.10272101409682002No Hit
ACGGTTGGGGCCTTCCGGGGGTGACATTCAGCCGGCGGTTCGGGGA460.10053546060539832No Hit
ATGTTAGGGATAATATGATTTATCTCAACCCTAGCAGAAACAAACC460.10053546060539832No Hit
TATTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.10053546060539832No Hit
AGGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.10053546060539832No Hit
TATCAAGGGGTCCTTAGCGGGCCCAGCGGATCCGGACGTGGAGCGA460.10053546060539832No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG460.10053546060539832No Hit
GTCTTGGGGGATGACTAGATGTGTATGTTTATTATGGTGTCTAAAA460.10053546060539832No Hit
GCCATGGGGTGAAGAAGATGAAGAAGTCATCCGGGGAAATTGTGTA460.10053546060539832No Hit
CACATCGGGCACTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTA460.10053546060539832No Hit
TGACCAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT460.10053546060539832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)