FastQCFastQC Report
Sat 31 Dec 2022
SRR5843734.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843734.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35865
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGGGGGCCTACCAACCGTTCTTATTGCTGGCGGCCTGAGGA690.19238812212463405No Hit
TACAATGGGATGGCAGCTAATATCCCTTGAATTCTACCTTTGAGCT570.1589293182768716No Hit
TGACTTGGGCTGAGATTAAAGGCTTGTGCCATTAACATGGCCAGCC500.13941168269901016No Hit
GACCTTGGGAAGTGAGATTTCGAAGGCGGCGAGAGGGTAAAACTGA490.13662344904503No Hit
AGGTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.13662344904503No Hit
CGTATAGGGGTCCTGGGCAAGCACTTCACCTCTCATGAGCCCTTGT480.13383521539104978No Hit
GCACTTGGGGGAAGATGAGAAACTTCAAGGCAAGATCAATGATGAG480.13383521539104978No Hit
AAGTGTGGGATCACAGACTTAAGAGCCAAAAAGCTTTTCATCTCTC470.13104698173706958No Hit
AATTTTGGGGTTTGGAGACCTGCGAGGTGAGCGAGACGAGCTCCAG460.12825874808308937No Hit
ACCAGAGGGGGAATGGTGTGGCCACTTGGCTCTGGGTAGCCAATGA460.12825874808308937No Hit
TAACTCGGGGAGACTACCCAAGATACAATTTGCAAAACACATGAAA450.12547051442910914No Hit
CAGCACGGGGTTTCAATGGGGAACGACATTGTAATGCTTATACCAA450.12547051442910914No Hit
CGCCATGGGGAACTGTGGTACCCAACCAAAATTCTGGTTCTGTTAG440.12268228077512895No Hit
ACGACTGGGCAGTCAAGTGAGATGGCTTGATAGGCAGGCAATTGCT440.12268228077512895No Hit
AACACAGGGAGCCCCTGCCCATCCAAAGCTGGGCACACGCCTCAGA440.12268228077512895No Hit
GCTTCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA430.11989404712114875No Hit
CAACCTGGGATTTTGAGGACTCATGGTAGGGCCAAGTGCTAGAACC430.11989404712114875No Hit
GTTATGGGGCTTATTTTTCAATGAGATTTGTGAGTTTAATATTATG420.11710581346716854No Hit
GCTACAGGTCTCAAGATGAATGGGGTAAAACCCAGGAGGCCATGGA420.11710581346716854No Hit
GATATTGGGTAAGAAAATTAAAATATGTGGCTGGTGATGCTGGGTT420.11710581346716854No Hit
CCTGCTGGGATTAAAGGCGTGCACAACCACTGCCCTGCATGCTTTT410.11431757981318835No Hit
ATATTTGGGGAAGTATGGGAACAAAGGACTTGGGGGATGAGGAATG410.11431757981318835No Hit
CTTAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA410.11431757981318835No Hit
GAAAAGGGGGTTCAAATACACTGTTCTTGTGCCTTTTAATAGACCA410.11431757981318835No Hit
CTGCCTGGGACGGAGACCCTTCGAGAAGTCGCGTCTCGACCAGGAG400.11152934615920815No Hit
TCTTATGGGATTTGGGGGAAGTGACTGCACCGGCAATTTCTGTTTG400.11152934615920815No Hit
TACACCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC400.11152934615920815No Hit
CTTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA400.11152934615920815No Hit
GTTGAAGGGGTATTCTTTTTATTAATAGTTACAGGTTTGTGGGTTA400.11152934615920815No Hit
CAAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.11152934615920815No Hit
TTAGTTGGGATGTTGCTGCTGTTAGGAAGGTAGGCAGAAGGATCCA400.11152934615920815No Hit
AATACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10874111250522794No Hit
AAGCTTGGGATGAGATAAAGTATTTTCCTAATTATGGTCTAATAAA390.10874111250522794No Hit
AATTTTGGGAAAAGGGGTGGATTTAATACCTTTAGAGACAGGGAAA390.10874111250522794No Hit
GCCAATGGGGAAGAACGATGCTGCAACAGGATCCTTCCGCACACGT390.10874111250522794No Hit
CTCCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10874111250522794No Hit
ACGCTTGGGGGAAAGATGTAGATTCTTCCTTCGGTATTTGTCCTTG390.10874111250522794No Hit
CACGTTGGGATATTTGCTACGGAAGCAATTAAACCTTTTCCAAAAA390.10874111250522794No Hit
TTTCTTGGGAGTGCATAAGCTTGTATCCTGCAGACAGGAACAGATG390.10874111250522794No Hit
TTATGAGGGGTGGCACAGTGACATAAACCAAAGAGGTCAGATGGAC390.10874111250522794No Hit
TCATCTGGGGTTCTGTAGTTTAGAAGTAGGGATTTTGTAGTGAAGC390.10874111250522794No Hit
ATCGCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA390.10874111250522794No Hit
AGCTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10874111250522794No Hit
CGCTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA390.10874111250522794No Hit
TCGACTGGGATTGCAGAATGGAATGCATGCTACTAACCTAGTCTGT390.10874111250522794No Hit
ACACCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10595287885124774No Hit
CGTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10595287885124774No Hit
TTGCACGGGGGAAAAGTGGAAAAAGTAGAACTCATTTCTTGGGTGC380.10595287885124774No Hit
TAGGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.10595287885124774No Hit
TAAAGTGGGGGAAATTGAAGCAAGAGGATTAAAGTCAGAAGGGCTT380.10595287885124774No Hit
CGTAACGGGGGGCAGTGTAGTCTTAGCAACTGGTGTATATTTTTAT380.10595287885124774No Hit
AGTTACGGGATGGAGGAGGAAATTATGGAAGTGGAAGTTACAATGA380.10595287885124774No Hit
ACATTTGGGAAGAACAAAAAATGATTTCCTATCCACCTGAATATGT380.10595287885124774No Hit
CTTGACGGGAATTAGGACTCCATGGTGAGACTCTCTTTCAAAGACC380.10595287885124774No Hit
TGGCCTGGGCAGTGTAGTCTTAGCAACTGGTGTATATTTTTATATG380.10595287885124774No Hit
CTCTTGGGGACAGATAATTTATAAGATTTGTAAAGTTAGCCATTAT380.10595287885124774No Hit
AGCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10316464519726752No Hit
GTGTCCGGGATCTTTGAGGTTTTCCCCCACTTTCTCCTCAATAAGT370.10316464519726752No Hit
TAGACTGGGGCATCGGGTGTGCGAAGACTTTGGGGTGATAGCAACC370.10316464519726752No Hit
TGGTCCGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG370.10316464519726752No Hit
GTAATCGGGACTTTCTGTCTTAGCAACCATTTTTAACATTCCAAGC370.10316464519726752No Hit
AGCCATGGGGAATGACATAGACATCTTTGAGATCAATGAGGCCTTT370.10316464519726752No Hit
GCAGACGGGATACAAAGCCAGGACTGAGATGTCCTTTTTAATAACA370.10316464519726752No Hit
TGACTGCGGGGAACTACATGTACCAAGTCCCAGACAAATTTGACTG370.10316464519726752No Hit
GCTGTAGGGAAGCAGGGAGATGCCTGGAGCGACCCCACCTTGGCCA360.10037641154328732No Hit
CCTTGTGGGGACTGCCGGGGGCTCCCCACTCCATAAAGCGAGAAGA360.10037641154328732No Hit
TTATCCGGGCCTCCATTGGGATTTAACACACCAGTGGGAACCTCAT360.10037641154328732No Hit
CAAAACGGGGGCGAAAAACATGGGCTGGAGGCAGATGTTCCTCACC360.10037641154328732No Hit
TTATAGGGGACCACACCCCTGACTCCTGCCTGTTCTAATCTTGTAT360.10037641154328732No Hit
CTTGGTGGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGC360.10037641154328732No Hit
GTAATGGGAATTGAGAATGGGGTGTGTGCTGTAAAAGGCTAACAGG360.10037641154328732No Hit
TTAGCTGGGAAGAAGACAGGCAGACTGAAGAACGTCTTCCACCCTG360.10037641154328732No Hit
AATACAGGGGTCTCTCCAACCTGCCAGGGAAGGGCTCTTCTAGTTC360.10037641154328732No Hit
CCAGAAGGGAGAGGCTAGAAAGGCAGTCCGGGGCAATGATGGACGC360.10037641154328732No Hit
ACAATAGGGATGAAGGGCTTTGACAAGATGTGCCACCCATTGAACA360.10037641154328732No Hit
CAACACGGGGCCATGACCCATCTCCCTGTGGACACACGGCTTTCCC360.10037641154328732No Hit
CTACCAGGGGTCAAATCTGCATGTGTGGGATGTCTGCTGTTTGTAC360.10037641154328732No Hit
TAATCAGGGCGATCTATTCACGGGAGGATTTTATTGCTGTGAAGAG360.10037641154328732No Hit
ACTTTGGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT360.10037641154328732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)