FastQCFastQC Report
Sat 31 Dec 2022
SRR5843733.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843733.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34150
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGGGGGCCTACCAACCGTTCTTATTGCTGGCGGCCTGAGGA580.1698389458272328No Hit
TAACTCGGGGAGACTACCCAAGATACAATTTGCAAAACACATGAAA500.14641288433382138No Hit
ACGTCAGGGGTTGTTTATTCGTCCACCTTCATTCAGGTGTGCTCCC470.1376281112737921No Hit
CGTAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.1376281112737921No Hit
TCTTATGGGATTTGGGGGAAGTGACTGCACCGGCAATTTCTGTTTG470.1376281112737921No Hit
AGAGTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA460.13469985358711567No Hit
GTTTTTGGGGGAGGCCAACTATGACGAGTACGCTCTGCTATTCAGC460.13469985358711567No Hit
TGCGGTAGGGAATGTTTCTCATTAAAAGTGGTAAAGCTCAATTAGG460.13469985358711567No Hit
GCACAGGGAGAAGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGT450.13177159590043924No Hit
ACATAAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCCTC440.12884333821376281No Hit
ATATTTGGGGAAGTATGGGAACAAAGGACTTGGGGGATGAGGAATG440.12884333821376281No Hit
CTAACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC440.12884333821376281No Hit
AGCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.1259150805270864No Hit
ATACTCGGGATGAAATCAACACACAGCTTTCCACTGTCATTCGCCA430.1259150805270864No Hit
TTAGTTGGGATGTTGCTGCTGTTAGGAAGGTAGGCAGAAGGATCCA430.1259150805270864No Hit
TTATCCGGGCCTCCATTGGGATTTAACACACCAGTGGGAACCTCAT420.12298682284040995No Hit
CTTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA420.12298682284040995No Hit
ATGTCGGGGATCAGGTCTGATGGGAAAATCTCAGAACAGTCAGACG420.12298682284040995No Hit
AATTTTGGGGTTTGGAGACCTGCGAGGTGAGCGAGACGAGCTCCAG410.12005856515373353No Hit
AAGCTTGGGATGAGATAAAGTATTTTCCTAATTATGGTCTAATAAA410.12005856515373353No Hit
TGCTGTGGGAGGAATTGGAGGGGGTGGAGTTTGAGAAATCCGTGTC410.12005856515373353No Hit
TTATGCGGGATTTAAGAGAAGGCACTGCTTGTATAAGTGTGAACCG410.12005856515373353No Hit
TAAAGTGGGGGAAATTGAAGCAAGAGGATTAAAGTCAGAAGGGCTT410.12005856515373353No Hit
TGCCAGGGGACAAACACTTATTACAACCCAAGAACACATATGATTA410.12005856515373353No Hit
ACAGCTGGGACTTTGGGCAAGCAGTGAAGTGGTCCGTAGGTAAAGA410.12005856515373353No Hit
AAAGCGGGGGGGAAGCACTGTTTACAGTAACCCTTACCAAGATAAT410.12005856515373353No Hit
CAATTAGGGATGGCCCAAAAACTATAGTATAAGTTTGAAATTTCGG410.12005856515373353No Hit
TAAGTAGGGATCATCTTTATGTTTAAATGCAAAGGAAATTAAAAAT400.1171303074670571No Hit
CATTAGGGGGGTCTAAGATTTTGAAGATTGTTTCCTTCATACAACT400.1171303074670571No Hit
CACGGGGGGGTTTTGCAAACAGGATTATCATATTCGATACTAAATG400.1171303074670571No Hit
AGCATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA400.1171303074670571No Hit
CCAAAAGGGACTCATGCATATCACATAGTTAATCCAAGTCCATGAC390.11420204978038068No Hit
ATCTGTGGGATCTGAAAACTTGGAGATGGGTAGAGTTTGGAATGCT390.11420204978038068No Hit
CTTGACGGGAATTAGGACTCCATGGTGAGACTCTCTTTCAAAGACC390.11420204978038068No Hit
ACACCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.11127379209370425No Hit
GCCCGAGGGATACACGTTTCTGGAAACTGCCTCGTCATGCGACTGT380.11127379209370425No Hit
GGGCATGGGGACTTCATTCTCCATCATTTAACCATGTTCTTTCCTG380.11127379209370425No Hit
CCTGCTGGGATTAAAGGCGTGCACAACCACTGCCCTGCATGCTTTT380.11127379209370425No Hit
TTGCACGGGGGAAAAGTGGAAAAAGTAGAACTCATTTCTTGGGTGC380.11127379209370425No Hit
AAGCTTGGGGTACATGCACACATTCACACATACAAGCATTTACATG380.11127379209370425No Hit
CAAAACGGGGGCGAAAAACATGGGCTGGAGGCAGATGTTCCTCACC380.11127379209370425No Hit
ACAACTGGGAGAAAACACTAAGGAAGAAGTAATTGTAAGGAGTAAA380.11127379209370425No Hit
TCTCTCGGGAGAACTCACAGAGACTGAGTTACCAACCAAAAAGCAA380.11127379209370425No Hit
CATTTAGGGGATTAATGAAACCAGCTATAATGGCTTTCCTGTTATA380.11127379209370425No Hit
AGGTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA380.11127379209370425No Hit
ATTATTGGGACCATCATATTTTTCTTGTTTCTCCAAGACTAACATG370.10834553440702782No Hit
GTCACAGGGGGAAGAATGGACTCTAAGGAGGCTGTTTGCACAAGGC370.10834553440702782No Hit
ACAGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10834553440702782No Hit
ATAGCAGGGAGGACTTATTCTTCTTACATGACAAAAAATTGCTCCC370.10834553440702782No Hit
ACGCTTGGGGGAAAGATGTAGATTCTTCCTTCGGTATTTGTCCTTG370.10834553440702782No Hit
CTCGTTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT370.10834553440702782No Hit
TTGCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA370.10834553440702782No Hit
CTGCTTGGGGTCCTTTGTGGAGAGACAGGGAGGTGGAAGAAGTGAC370.10834553440702782No Hit
TGCTAGGGATTCCCAAGTAGTTTTTCCTCATAGGAAAGGTCTAGTG370.10834553440702782No Hit
CTACACGGGATTTTCTTACTGTACATAAAGACATTCCTTACGTCAT370.10834553440702782No Hit
ACGTACGGGATACTAAAATGTATTTAGGGAAGGCTAAGAAAATTGT370.10834553440702782No Hit
CTGGCTGGGACCACTGATCTTCCTGGAGAAAGTAAGGACTTAGATT360.1054172767203514No Hit
CGTATAGGGGTCCTGGGCAAGCACTTCACCTCTCATGAGCCCTTGT360.1054172767203514No Hit
TACTAAGGGGCTCTGTCAGATTGATGTTCCTTTAGATACGGTCACA360.1054172767203514No Hit
TGTCCTGGGTGGAGTCAGCAGGAGAAGGGCCACTAGATGTGAGGCT360.1054172767203514No Hit
ATAAGTGGGATTAGTTGACATGATATATTAATCAATTTCTACCATA360.1054172767203514No Hit
CGACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.1054172767203514No Hit
GCTCAAGGGAAAGACAGTGGAGCCTCCACAGATGACAGTGCAGCTG360.1054172767203514No Hit
AGTTACGGGATGGAGGAGGAAATTATGGAAGTGGAAGTTACAATGA360.1054172767203514No Hit
TATTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA360.1054172767203514No Hit
TCTTAGGGGGAGAGCAGCGCCTTGGAGGTCCCGTGGATCTGTGTCT360.1054172767203514No Hit
AGCCATGGGGAATGACATAGACATCTTTGAGATCAATGAGGCCTTT360.1054172767203514No Hit
CAGCACGGGGTTTCAATGGGGAACGACATTGTAATGCTTATACCAA360.1054172767203514No Hit
CATTCAGGGGTCTCAGCTGAGGCAGCCATCTTGCTCTTGCCGCGTG360.1054172767203514No Hit
CTCTTGGGGACAGATAATTTATAAGATTTGTAAAGTTAGCCATTAT360.1054172767203514No Hit
AATACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.10248901903367497No Hit
TACAATGGGATGGCAGCTAATATCCCTTGAATTCTACCTTTGAGCT350.10248901903367497No Hit
AATTTTGGGAAAAGGGGTGGATTTAATACCTTTAGAGACAGGGAAA350.10248901903367497No Hit
CCGCATGGGAGGGAGATTGGGGGATGAGATCCTTAGGTTTTAACCC350.10248901903367497No Hit
AAGTTTGGGGAACCACAGGTATGGAGTTATAATGGGGGCTGAGGCT350.10248901903367497No Hit
ATCAATGGGACGTCTGGGGCGGGACATCCGCAAGGAGGGGCAGACA350.10248901903367497No Hit
TCACGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.10248901903367497No Hit
TCTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC350.10248901903367497No Hit
TATTAAGGACAAGAAGTTCGGCTACAAGACCATTGTCATGGGCGCC350.10248901903367497No Hit
TATTATGGGGAGTGCTGACAAGCACTGTGGTTCTCAAATTTTCCTC350.10248901903367497No Hit
GTGTCCGGGATCTTTGAGGTTTTCCCCCACTTTCTCCTCAATAAGT350.10248901903367497No Hit
TCTTATGGGGAACGGGAGAGGGGAATGGAGATTAGCCCAATGTGTG350.10248901903367497No Hit
GCTACAGGTCTCAAGATGAATGGGGTAAAACCCAGGAGGCCATGGA350.10248901903367497No Hit
GCACTTGGGGGAAGATGAGAAACTTCAAGGCAAGATCAATGATGAG350.10248901903367497No Hit
CAAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA350.10248901903367497No Hit
ACTTTGGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT350.10248901903367497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)