FastQCFastQC Report
Sat 31 Dec 2022
SRR5843731.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843731.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64031
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT800.12493948243819399No Hit
TTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT680.10619856007246489No Hit
CACTGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.10619856007246489No Hit
CTAACCGGGACCCTGAAGTGTCGGGTAGCCAAACTCACCGGTCCTT670.10463681654198749No Hit
CAAAGCGGGAGTTCCATGATGGCGTCGGCGGTGCTGTCAGCGTCTC650.10151332948103262No Hit
CTCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10151332948103262No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)