FastQCFastQC Report
Sat 31 Dec 2022
SRR5843730.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843730.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53775
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1100.20455602045560206No Hit
ACAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1020.1896792189679219No Hit
TCCTGCAGGATATAAAGAAACCAGACCGTGATGACTGGGAGAGCGG810.1506276150627615No Hit
TACGCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA810.1506276150627615No Hit
AGCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA740.13761041376104136No Hit
AACAGGTGGGGTGGAAGATGAGAAACTTCAAGGCAAGATCAATGAT700.1301720130172013No Hit
ACTAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.12645281264528127No Hit
CAACACGGGGATCTCAAACCGGGACCCCAGATCCAGAAGATCATGA680.12645281264528127No Hit
CCAATCGGGGTCGGGTAGATGACAAAGTGAATTTCCATTTTATTCT680.12645281264528127No Hit
ATGGCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.12459321245932124No Hit
CAACAAGGGATTGACTACAGTGGGGGCAGCTAATTAATGATTAATC670.12459321245932124No Hit
TGTTTAGGGGACATGCCCCCTTCCCCCACTGTCCTCATCTGGTTTG670.12459321245932124No Hit
TCCAGTGGGGAGATTAAGAATGCCAGAAATACTTCCCTCCCTTGAA670.12459321245932124No Hit
CAATATGGGGATTAAAAACCAGGGAGGGTGGGTGTAGCACCCGTAG650.1208740120874012No Hit
CAAAAAGGGACAGACACTGGGCTTAAAAAGGGTATTTGGACACTTG650.1208740120874012No Hit
TATTACGGGGGTTGGTTTCGGTGTCGCCCTTCAGGAACTCAGAACC650.1208740120874012No Hit
TTACGACGGGATAGACAGCGATGTGAGCACTCTCATCTGCGGATCA640.1190144119014412No Hit
ACCTTAGGGGCACCAAGTTTGTTCAGCTTTTACTAAAGATGTCTAC640.1190144119014412No Hit
TATGTAAGGGACCTGAAATCTGAATATGATACAAAAAAAGCAGGCC640.1190144119014412No Hit
CTACAAGGGATGGAATTAGTTTTCTGAGTTTTATTTATATGTAAGT640.1190144119014412No Hit
TCTTCTGGGGATAAAGGCGAGCATCGCTATTGACAATGGAAGAGCA630.11715481171548119No Hit
CTTCTTGGGACAAAAAGGACTACGATATGGTATAATTCTATTCATC630.11715481171548119No Hit
AATTGGGATTCCTGTTTGTGGTAGGAGATAACCAGTCTTGTTTGTT630.11715481171548119No Hit
GATACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.11715481171548119No Hit
ATCGACGGGGCCCAGTTAATGTCCTTGATCATCAATACCTTCTACT630.11715481171548119No Hit
CTCCACGGGGTTCCCAAATGCAATCTTACTTAGACCTTCACTAAGT620.11529521152952116No Hit
TAGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.11529521152952116No Hit
TACTCTGGGGCATTGAGGGGACCAAGGACCCCTTCGGAGTGTTCTC620.11529521152952116No Hit
TCATTGGGGTTTCTGCTGTAGATAAGAGCACAGGAAAGGAGAACAA620.11529521152952116No Hit
CGCACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.11529521152952116No Hit
CTGTCGGGGACCCCAACCTGAAGTCAGTAAACGAGCTCATCTACAA610.11343561134356114No Hit
AATTTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA610.11343561134356114No Hit
TAAGTGGGGGAACCAGTAAGGGAATGCCAGGCGGCACCGTGGTGCA610.11343561134356114No Hit
CAGTAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA610.11343561134356114No Hit
ACTGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC610.11343561134356114No Hit
CGTCAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.11343561134356114No Hit
TTGTGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT610.11343561134356114No Hit
AGCATAGGGGTGGCAGTATGAAGGGAGAGCCACCTGTCCCGGGCAA610.11343561134356114No Hit
TTCAGGGGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGAT610.11343561134356114No Hit
TTTTGAGGGGCTGGCTCCACGGTCCGCTGGAGCAAATCGCATAAGT600.11157601115760112No Hit
CTTTCGGGGAAGACAAGGATCTGCTTGAGAAATAATTTCTCAGAGT600.11157601115760112No Hit
AGCCATGGGATGAAGAGATTGCAAAAGTCGAGAAACTCAAACCACT600.11157601115760112No Hit
GCTAGTGGGGGTTTTGGCAGGAGATACATTGCCGATTGAGGTGTAC600.11157601115760112No Hit
TCACCTGGGGGACCGGAAATTCGGTTGTTAGATCAAGCGGTGGTAC600.11157601115760112No Hit
TCGCACGGGCCTTTCTCGCTCCCCGGCCATCTTGGCGGCTGGTGTT600.11157601115760112No Hit
CATCTAGGGGAAGTAATGGGAAACAAAATCCATAGTTCATATGCCA600.11157601115760112No Hit
ATCGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.1097164109716411No Hit
CATATTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG590.1097164109716411No Hit
AGGTTTGGGGCTTCTTTCATCCAAGCAGGACCACTGTATACCACAG590.1097164109716411No Hit
CAAGCTGGGGCTATCAACAAGTGCCCCCTGCTGAAGCCATGGGCCT590.1097164109716411No Hit
TCATAAGGGACATTGATCAGACCATGGTACTGGCCAGTGGAGGACA590.1097164109716411No Hit
TATCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.1097164109716411No Hit
CATAATGGGGGCTAGATTGTGCCTAAATGGACAACATAAGGCACCC590.1097164109716411No Hit
CTCCGGGGAGATAGGAATTCCCATCCTATTTGAGTTGAACTCTCTT580.10785681078568107No Hit
TCTGACGGGATGAATTCCTGTACATATTTCTCTACTTTTGTATCAG580.10785681078568107No Hit
TGACCAGGGGCCCTCATCTGGTTTCTCATTTTTGAATCAACATCTT580.10785681078568107No Hit
TGGTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10785681078568107No Hit
CCTAACGGGGTTTGGAGTTGTATCAGAAAGACCTGGAGGATGATTC580.10785681078568107No Hit
ACTCCTGGGGGCTTATGTTGCAATATTTATTTTCTTGTATTAGAGA570.10599721059972106No Hit
AATTACGGGACCACAGATAAACTTGAACAGCACCCTTACTGTCTGC570.10599721059972106No Hit
ATGTGGGGGATTTGTTTAGGGTTGTGAGGTTGTGTAAAATAGTACT570.10599721059972106No Hit
TATCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA570.10599721059972106No Hit
TGCATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10599721059972106No Hit
ATCCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10599721059972106No Hit
AATGCTGGGACTGTATAATGGAGGCTGACCAGAGCAGTTTAGGAGA570.10599721059972106No Hit
GCTCTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT570.10599721059972106No Hit
AGCTTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG570.10599721059972106No Hit
ACAATGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10599721059972106No Hit
TCATCAGGGGAAAAGGACCAGAGTGCCCAGGAGGCAAGGGTACCAA560.10413761041376103No Hit
GCCCTTGGGGGAGACATAACGATAGCGACTCTGTCTCAGGGGATCT560.10413761041376103No Hit
GCTTAAGGGACACAAGGGAAGTGATCGTCGCCGGAGTCAGATCGTC560.10413761041376103No Hit
TCTATCGGGACCTGACAGGGTGCCCCCCGCTAATGCTCTGTGTATT560.10413761041376103No Hit
AGCTAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA560.10413761041376103No Hit
CTTTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10413761041376103No Hit
AGCTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10413761041376103No Hit
AGGTTGGGGGGCATGAGAAGCAGAAGCGAGAGCCCCCAGGAGCTGG560.10413761041376103No Hit
TGCAAAGGGGAGGACTTCTTCTTGGAACATGAAACTCTCGTTACTT560.10413761041376103No Hit
GATTTTGGGAGCTGAAGTCATTGGCAACAGCAATTGAAGTGAAGAT550.10227801022780103No Hit
CCACACGGGGTCCTTGAAGCTTGTATCTGATATCAGCACTGGATCG550.10227801022780103No Hit
CACTGCGGGTAGCGACTCTGTCTCAGGGGATCTGCATATGTTTGCA550.10227801022780103No Hit
CTTGCTGGGATTTGGGGGAAGTGACTGCACCGGCAATTTCTGTTTG550.10227801022780103No Hit
CTTTTTGGGACCGGGAACTGGCCAGAAACTGGATTCCCACAGCCGG550.10227801022780103No Hit
CAACTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG550.10227801022780103No Hit
TAACACGGGAATATACCTCTGTTCCCAGGAGCTACTGAGGTACCCA550.10227801022780103No Hit
TTTACTGGGAATCCACACACCAAAAGGACGAACATGAACCCTAATA550.10227801022780103No Hit
CAACATGGGGAAAAAGAAAAGGCCAGCCTGCCGGGAGTGAAGAAAT550.10227801022780103No Hit
CATGAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.10227801022780103No Hit
TATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.10227801022780103No Hit
CTTAAAGGGAAGGACCAATTCAGAACTGAACAGCTATGCATAGGAC550.10227801022780103No Hit
TTATTTGGGATCCAAAGACTGTACTGGCCAGTGTCCTTTACTTTCC540.10041841004184102No Hit
TGCTTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA540.10041841004184102No Hit
CTGATTGGGGGAGATGGAGCAGTTCATCCGAGAGAGCTACCCAGAT540.10041841004184102No Hit
TCAAGCGGGTCCTCTTTCTCCTCTCTCCTCCCTTCTTTCCTTCCTT540.10041841004184102No Hit
GTGCCAGGGGATGTCCTGAGGCTGTGGTCAGTAAGGTTGGTTCTGC540.10041841004184102No Hit
TTACCTGGGATCCCTCTAACGTACTATGTCTTTTGATTTAGCATGC540.10041841004184102No Hit
ATACCGGGGTAGTCACAGTGCAAAGGTGTTTGTTTCCAGTAGCTAT540.10041841004184102No Hit
TGACCAGGGGCACCTGAACTTTTTTCTGTGCAAAGCCACTGTGTCA540.10041841004184102No Hit
CAATAGGGGGAGACTCTGGCAATCATGGAGTGGCTGAAAACGGAAA540.10041841004184102No Hit
GCTTCCGGGATTTCATCCAAAACACAATGTGTAAACTTACTCAGCT540.10041841004184102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)