FastQCFastQC Report
Sat 31 Dec 2022
SRR5843729.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843729.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51121
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1000.19561432679329432No Hit
TGCCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA960.18778975372156256No Hit
TCCTGCAGGATATAAAGAAACCAGACCGTGATGACTGGGAGAGCGG760.1486668883629037No Hit
ATACGGGGAGAGGACATGGGCTTAGCATATCCTTCTCATATCCCAC760.1486668883629037No Hit
GATACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA750.14671074509497076No Hit
CTACAAGGGATGGAATTAGTTTTCTGAGTTTTATTTATATGTAAGT750.14671074509497076No Hit
TTACGACGGGATAGACAGCGATGTGAGCACTCTCATCTGCGGATCA710.138886172023239No Hit
TATGTAAGGGACCTGAAATCTGAATATGATACAAAAAAAGCAGGCC690.1349738854873731No Hit
TGTTTAGGGGACATGCCCCCTTCCCCCACTGTCCTCATCTGGTTTG690.1349738854873731No Hit
CAACAAGGGATTGACTACAGTGGGGGCAGCTAATTAATGATTAATC670.1310615989515072No Hit
TAGTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.12714931241564134No Hit
CACACCAGGGAGGTGAAGATGGCTGCCGCCCGGGCTGCGGCCCTGG650.12714931241564134No Hit
GTCAATGGGTCCTTCCTGCAGCAAGATGATCGTGACCCAGCTGTCC640.1251931691477084No Hit
AGGTTTGGGGCTTCTTTCATCCAAGCAGGACCACTGTATACCACAG630.12323702587977543No Hit
ATTCGGGCGATCTTTAGGAGGGACACCTATCCATATGCATACTACA630.12323702587977543No Hit
GCTCGTCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC630.12323702587977543No Hit
GTTGCTGGGGATAGATAGATAGATAGATAGATAGATAGATAGATAG630.12323702587977543No Hit
CTTTTTGGGACCGGGAACTGGCCAGAAACTGGATTCCCACAGCCGG620.12128088261184249No Hit
AGCTGCGGGGGGGGCCAGAAATGTTCTGTGATCCGGGACTCACTGC620.12128088261184249No Hit
TGCTTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA620.12128088261184249No Hit
AGACAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA620.12128088261184249No Hit
GCAATAGGGGGGGAAGAGAACTTGGTACTCTGCTCTCTAAGAACAA610.11932473934390955No Hit
CTTCTTGGGACAAAAAGGACTACGATATGGTATAATTCTATTCATC610.11932473934390955No Hit
AATTTAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA610.11932473934390955No Hit
TTTAGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC610.11932473934390955No Hit
TGACCAGGGGCCCTCATCTGGTTTCTCATTTTTGAATCAACATCTT610.11932473934390955No Hit
ACAATGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.11932473934390955No Hit
AGCTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.1173685960759766No Hit
TATCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA600.1173685960759766No Hit
CTTGCTGGGATTTGGGGGAAGTGACTGCACCGGCAATTTCTGTTTG600.1173685960759766No Hit
TGTAAGGGGTTCTTGAGTGTCTTCTTTAGTTGAAATAGGTTAGTAG600.1173685960759766No Hit
GCCGCGGGGGTAGGCAGAGGCTTTGGTTCTGCATCGGACTTGACAG600.1173685960759766No Hit
AGCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.1173685960759766No Hit
CGCACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.1173685960759766No Hit
GCTACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.1173685960759766No Hit
AGTCTTGGGGTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACATTG600.1173685960759766No Hit
CAACACGGGGATCTCAAACCGGGACCCCAGATCCAGAAGATCATGA600.1173685960759766No Hit
TCTTCTGGGGATAAAGGCGAGCATCGCTATTGACAATGGAAGAGCA590.11541245280804367No Hit
AAAAAGGGGGGCAGAAAGCATCACAAAAATATTTGAAATTGTACGG590.11541245280804367No Hit
GCTTAAGGGACACAAGGGAAGTGATCGTCGCCGGAGTCAGATCGTC590.11541245280804367No Hit
CAATATGGGGATTAAAAACCAGGGAGGGTGGGTGTAGCACCCGTAG590.11541245280804367No Hit
CACGGGGGGGTTCCCAGAGCCACTGACTTGGAGACACCCTGGTCTG590.11541245280804367No Hit
TCTGACGGGATGAATTCCTGTACATATTTCTCTACTTTTGTATCAG590.11541245280804367No Hit
CTACTTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC590.11541245280804367No Hit
ATTTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.11345630954011073No Hit
GATACAGGGACTGTATGCTAGCTAGCTCTCACCAAATTAGTCCAAC580.11345630954011073No Hit
CACTGCGGGTAGCGACTCTGTCTCAGGGGATCTGCATATGTTTGCA580.11345630954011073No Hit
TCATCAGGGGAAAAGGACCAGAGTGCCCAGGAGGCAAGGGTACCAA570.11150016627217776No Hit
GCTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.11150016627217776No Hit
CCACTGGGGAACGGACTACATTTTAAAAGTGCTTTGTCCAACCTAA570.11150016627217776No Hit
CTTAAAGGGAAGGACCAATTCAGAACTGAACAGCTATGCATAGGAC570.11150016627217776No Hit
ACCTTAGGGGCACCAAGTTTGTTCAGCTTTTACTAAAGATGTCTAC560.10954402300424482No Hit
TTCACAGGGGCGATCTACAACGGGGCCACTAGGAGGGTCCTTTGTC560.10954402300424482No Hit
TGCATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10954402300424482No Hit
GCTAGTGGGGGTTTTGGCAGGAGATACATTGCCGATTGAGGTGTAC560.10954402300424482No Hit
AATTGCGGGGTGTCCGTCGTGGATCTGACGTGCCGCCTGGAGAAAC560.10954402300424482No Hit
ACTAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10954402300424482No Hit
AAGTTGGGGATCCAAAGACTGTACTGGCCAGTGTCCTTTACTTTCC560.10954402300424482No Hit
AACAGGTGGGGTGGAAGATGAGAAACTTCAAGGCAAGATCAATGAT550.10758787973631188No Hit
ACTTTGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG550.10758787973631188No Hit
TTGCAGGGGATTGACTTTCTGGACAAAAATGATGACGAGTATATGA550.10758787973631188No Hit
TCCAGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA550.10758787973631188No Hit
GCTGCTCCGAAGAACATCATGCACTCCTGTGTGTGTGTGTGAGTGT550.10758787973631188No Hit
GCTCTGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT550.10758787973631188No Hit
TATGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.10758787973631188No Hit
GCTCTTGGGGGCGCGACGTGGGACAGCCGCGCCATGGCGGACGAAG550.10758787973631188No Hit
CATTCTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG550.10758787973631188No Hit
CCAGCTGGGGGATACCTTCAGCAGGGAAATCTTCCGGCATGAGAAA540.10563173646837895No Hit
TACATTGGGGCACCTACATGTAATCCATTTTAGAGTGGCTGTGTTT540.10563173646837895No Hit
TTGTGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT540.10563173646837895No Hit
ATAATCGGGGTTTGTGTGGTTTTTGTGTGTGATTATACATGTGTAT540.10563173646837895No Hit
TAGATGGGGGTACACAGTAAGCAAAGGCTTTGACTTTCCTTTGTTG530.103675593200446No Hit
GTCATAGGGATGGTGAATAGGGATCAAGTTTCACATCCTTCTCTCT530.103675593200446No Hit
CTGATTGGGGGAGATGGAGCAGTTCATCCGAGAGAGCTACCCAGAT530.103675593200446No Hit
ACTGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.103675593200446No Hit
GTAAATGGGGGGGCCGCCCTGGCGGATGCACAGAACCCCAGCCTCT530.103675593200446No Hit
CATGAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.103675593200446No Hit
AATGCTGGGACTGTATAATGGAGGCTGACCAGAGCAGTTTAGGAGA530.103675593200446No Hit
CCAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10171944993251306No Hit
ATGAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10171944993251306No Hit
TTTCGAGGGGGTGAAGGGGTGGAGCCGTTGGGGAGGAGGTCGGTAG520.10171944993251306No Hit
GCGCCTGGGATTTGGGGGAAGTGACTGCACCGGCAATTTCTGTTTG520.10171944993251306No Hit
TGTTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10171944993251306No Hit
CTACACGGGGGTCAGTATCCAGACTGGCTCAGAAAGAGTGGGGGGA520.10171944993251306No Hit
TATACCGGGTAAGATTCCATGCCTAGATGTGATACACGTTTCTGGA520.10171944993251306No Hit
AGTGCAGGGGTTGCTCTAGACTTCGAGCAGGAGATGGCCACTGCCG520.10171944993251306No Hit
CTAGGTACCCTGAGAGGGAAAGCCACCGGAAGAGTCACTTTAATCG520.10171944993251306No Hit
CTAGAAGGGGTTGTGCACTCTTTGAATGTATACTGGATTAGAAGCA520.10171944993251306No Hit
GCTGTGGGGATCTATGTGTGTTTCTTCAAGGGAGCTGACACAGACC520.10171944993251306No Hit
TCATAAGGGACATTGATCAGACCATGGTACTGGCCAGTGGAGGACA520.10171944993251306No Hit
GCAGCCTGGAAACCGTCCTTGCTACAAGTGACACAACGCAATAACC520.10171944993251306No Hit
GCGTAAGGGATTTATTTATTTTTTAAGCTATTTGTTCCTTTGCTCT520.10171944993251306No Hit
TGCAAAGGGGAGGACTTCTTCTTGGAACATGAAACTCTCGTTACTT520.10171944993251306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)