FastQCFastQC Report
Sat 31 Dec 2022
SRR5843722.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843722.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32136
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.11824744834453572No Hit
GATCTTGGGAGAGGCTTCCTTTGCTTTTTTTAGCAGAACATCGTCC360.11202389843166542No Hit
TAATCAGGGGGGACAGCCAAAGGGGACTTGAAGGAGACGGGCGACA350.10891212347523026No Hit
CAATATGGGGAGCGAGGAGCGGCTTCTCTGTGTGGAGAACAACAAA350.10891212347523026No Hit
TGATTAGTTTCATATTTCCCAATTGTTTATCTCTTGTTTGGAGTTG350.10891212347523026No Hit
CCTCTCGGGAGCCAGGAGGTTGTGCTAGATGTTGGCTGCCCCTATG330.10268857356235997No Hit
CTCCGTGGGAAGACTCCTACATTGCCAGCCAGGGCCCTCTTCTCCA330.10268857356235997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)