FastQCFastQC Report
Sat 31 Dec 2022
SRR5843699.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843699.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64077
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA830.1295316572249013No Hit
GCAAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA790.12328916772008677No Hit
AACAAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA780.12172854534388314No Hit
ATTTAAGGGCTCGATTCACGGCGAGACATTTAGCCACCACTCTCTG780.12172854534388314No Hit
CGCTCCGGGGATTTTCTCCATTATAAGGCCAGTGGATGTAATTTGT730.113925433462865No Hit
CTAAACGGGGACCCATCTGGCCCACAGTGCCAATGACCACATTATA730.113925433462865No Hit
CAATACCCCACGGAAAGAGGGAGGCTTGGGCCCCCTGAATATCCCT720.11236481108666135No Hit
CGTAAAGGGAGAGAGAAAAAGTAAAGGACAGAAGAAGGAGACTGGA710.11080418871045772No Hit
TCAAAGGGGGTGTCTTCCGATGCAGTGTCCAGTCATGACCTCGATC710.11080418871045772No Hit
ATGAACGGGGCTTTTCCGGTGGAGGAGTCTGGAGACGACGATCAGA700.1092435663342541No Hit
AACGCAGGGGGGCTGTGACAGCTGATCATTGAAAATATAGCGTTTT690.10768294395805046No Hit
ATACGGGGGGGGAATTCTGACATTAATTAGGGCTGAAAGCCCTAAC680.10612232158184684No Hit
GCCATCGGGAGCGTCCTTCGGAGCGGAAGGAATATGGCGTCCGCTA680.10612232158184684No Hit
CGACATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA670.1045616992056432No Hit
TTGACCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.1045616992056432No Hit
CACAAAGGGGGGAATTCTGGACATTAATTAGGCCTGAAAGCCCTAA660.10300107682943958No Hit
TGAATAGGGAGACAGGTCTCCTCACACCGGTCCAGTGGCCACATTT660.10300107682943958No Hit
GACGAGGGGAGTGGCCACATTTGCAGCGTGCCCTTCTGTCGAGAAT660.10300107682943958No Hit
CGACCTGGGAAGAATACAAAGAGGGTTTTGGTAATGTGGCCAGAGA650.10144045445323595No Hit
TATGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10144045445323595No Hit
TACTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10144045445323595No Hit
GCCAAAGGAAATTCCCTTGACCCAGACCTCGGACTTCCCACCCACA650.10144045445323595No Hit
CTGATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10144045445323595No Hit
CATGTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10144045445323595No Hit
ACCATAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA650.10144045445323595No Hit
TAGGGGGACATACCCCCTCCCAGTGGGCCGCTCTGGATCCTGGGCG650.10144045445323595No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)