FastQCFastQC Report
Sat 31 Dec 2022
SRR5843690.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843690.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45464
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTAGGGGGACATTCAGCCGGCGGTTCGGGGCGACGGACTCTCC780.1715643146225585No Hit
TGCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.15836705965159248No Hit
AAAACTGGGGTCTTCATCTGACTAATATAAAATTGTCTACCGTGAT610.1341720922048214No Hit
CCGTTGGGAGGTGGGACAGTCTCTGGATGGTCATTCCTTCAGTCTC570.12537392222417737No Hit
CTTTCTGGGAGCCTCTCCCGTGGCGTGAAGTAGAAGGGGATTTCAA530.11657575224353334No Hit
AGCTCTGGGAATCAAGAAATCAAGGAGTTTGCAGCCGGCTACAACG530.11657575224353334No Hit
TTGAGACGGGAGGAGGTGTGGGGCCAAGGTGTGAAGCGTGAACGCC530.11657575224353334No Hit
CACGCAGGGATTGGAGACCCCAAGGAACAGCAAGCAACTCCAACTT520.11437620974837233No Hit
TGACTTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT510.11217666725321133No Hit
CGATAAGGGGGCACCCTCCAGAGGAGCGGCTCTCTGGGCAAGATCC510.11217666725321133No Hit
TGCATGGGATAGCAATGGCCTTGCTGATTCCTCCTCCTCCTCCTCC510.11217666725321133No Hit
CTAGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.10997712475805033No Hit
ACAACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.10777758226288932No Hit
GTTTGAGGGGTGACGCAGCTCTTAGCGCAATGTATGTGCTGTTATC490.10777758226288932No Hit
ACGATAGGGATAACATCCAGTTTCAACTTTATGACTAATACATCTG490.10777758226288932No Hit
ACGCACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.10777758226288932No Hit
TGCCAGGGGGAAGCGCGACAGCATGGACGACGAGGAGGAGACCTAC490.10777758226288932No Hit
GAGTGTGGGATGGTAACTCAGTCTGAAATTGAAAGATAATTAAGGT490.10777758226288932No Hit
CATTCCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA480.10557803976772831No Hit
AGCAACGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCT480.10557803976772831No Hit
GCCAATGGGGAGTGCATCAACAAGTTTGCTTCCGTCTTCGGAACGA480.10557803976772831No Hit
TACGCAGGGTCTCTTTGCTGCCAGACCTCCGCCATCATGGGTCGCA480.10557803976772831No Hit
TAACTTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG480.10557803976772831No Hit
CCAAACGGGATACTACACTAGTTTCTTGATATGCATAACTCCTTGA470.1033784972725673No Hit
AAATGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAA470.1033784972725673No Hit
AACTGCGGGACAAGAAGTGGTTTTTGCTTCTGGCTTTTTCGTTTTT470.1033784972725673No Hit
ATTTAAGGGACCTCTGACACTGGGGAAGAAGAGGCAATCACCAATA470.1033784972725673No Hit
CAGTAAGGGGTTTAAGTTTTAAGTTAGAAGATTGTTGGATATTTAA460.1011789547774063No Hit
GGACATGGGGGGAATTCCCCGGGCCAATTGCCTCTATAACTAGAGC460.1011789547774063No Hit
GCTGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.1011789547774063No Hit
CTATTTGGGATTCTAAAACAAGCCCATTTTACCCAACTGACTTAAC460.1011789547774063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)