FastQCFastQC Report
Sat 31 Dec 2022
SRR5843689.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843689.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42884
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTAGGGGGACATTCAGCCGGCGGTTCGGGGCGACGGACTCTCC600.13991232161178993No Hit
TGCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.13291670553120047No Hit
AATTGTGGGATTGTGGTAGTGCAGTGGGCCGACTTGGTCATCTGCA550.12825296147747411No Hit
CACGCAGGGATTGGAGACCCCAAGGAACAGCAAGCAACTCCAACTT530.12358921742374779No Hit
GAGTGTGGGATGGTAACTCAGTCTGAAATTGAAAGATAATTAAGGT530.12358921742374779No Hit
ACGCACTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.12125734539688462No Hit
ACACACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC510.11892547337002146No Hit
AACTTAGGGATCTTTATCTGACAGTATGGTCAGAAGCTCAAGAAAT490.11426172931629512No Hit
CATTTAGGGCTGAGGCAGCACAAGGCTTACCCAGAGGGATGTGTAT480.11192985728943196No Hit
TGCTTAGGGGGAGTTGGTCTAGGCTGGCTATAAAATAGCTGAGCTG470.1095979852625688No Hit
CTACATGGGACTCCCTGGACTTGGACATGGCCCCAAGATGCTTGGC470.1095979852625688No Hit
CGATAAGGGGGCACCCTCCAGAGGAGCGGCTCTCTGGGCAAGATCC470.1095979852625688No Hit
TCCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.1095979852625688No Hit
ATTCCCGGGAGGGCCAGAGAACCAAAAGAAGGTGTGGCTTTTTGAA460.10726611323570562No Hit
CTTTACGGGGAATTATTTCACATGTAGTTACTTACTACTCCGGAAA460.10726611323570562No Hit
CTACTGGGGGGCTGCTGCTGCGCCAGACACAGAGGCAGACTCACAG450.10493424120884245No Hit
GCTGCTGGGACATCAGAATGTTAATTTATTTTGCTCCCTCTGTTAG450.10493424120884245No Hit
TGCATGGGATAGCAATGGCCTTGCTGATTCCTCCTCCTCCTCCTCC450.10493424120884245No Hit
AAGCTGGGGATCCTGTGCAGCCTGCAGAAGAACCTCCTTAGGAACC440.10260236918197929No Hit
CTTTCTGGGAGCCTCTCCCGTGGCGTGAAGTAGAAGGGGATTTCAA440.10260236918197929No Hit
GTCTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10260236918197929No Hit
CTCGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA440.10260236918197929No Hit
CATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC440.10260236918197929No Hit
TATGCTGGATCACAGTGATGTTTGACATGTCCGAAACTGGACTCAA430.10027049715511613No Hit
CATCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.10027049715511613No Hit
ATCTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA430.10027049715511613No Hit
AGACCAGGGATAACACATTTTAGGATGCTTTCTGATGATTTAAACT430.10027049715511613No Hit
ACTCCAGGGGAAGATTACCATGCTTGTCTTGCTTGGTAAGTATTTA430.10027049715511613No Hit
CTGTTCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA430.10027049715511613No Hit
ATTGCAGGGATGGATACATGCATACATTCAAAGCACTGTTCTCAAA430.10027049715511613No Hit
TGTCAAGGGGTAAAGGGAAAGACATGATAGCTAAGAAGGCCGAGGG430.10027049715511613No Hit
CATGCCGGGTCAAGAAGAAGGAGCTACTCCCCACCACCAGCACCCA430.10027049715511613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)