FastQCFastQC Report
Sat 31 Dec 2022
SRR5843682.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843682.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36295
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGCGGGCACTCACACAATCCCTGGCCAACAACCTGCCGCTGAA620.17082242733158837No Hit
TCCAGCGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATG620.17082242733158837No Hit
CGTCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC600.16531202644992424No Hit
ATTAGTGGGGATGCTCAACAGACCTTCCAAGTTTGACTGCATAATG570.15704642512742803No Hit
CTTCTCGGGCTTTCGGCTATATAGGAATAGTATGAGCAATAATGTC560.15429122468659595No Hit
TCTTGTGGGGCGCTGCCCATCACGGGTGATGACCCATCCATTTCCG550.15153602424576387No Hit
CTAGTAGGGGGCGGGGGCGGGGCATCACAGGTGTTTGGGAAGCGCT550.15153602424576387No Hit
GTGCCAGGGGGAAGGCGAATTCCAGGCCTGGTGGCTGAACCGCTGT550.15153602424576387No Hit
CGACATGGGATTTGAATTAATAGCAGGACTTGCCCTTTGGGCCCAT540.1487808238049318No Hit
AGTTCAGGGGACAGCCAAAGGGGACTTGAAGGAGACGGGCGACACG540.1487808238049318No Hit
CTCCTGGAGTGCTACTTTACTAGGTCTTTCTACAAACACATCTTGG530.14602562336409974No Hit
TTTGGAGGGCAGTGAACTTTTATAGCTATCTTTTATCCCTGTGGGT520.14327042292326767No Hit
TCATCAGGGGTCTCCAGCGGGCGCAGAGCTCGGCAAGGCGCTGGGA520.14327042292326767No Hit
CTTACTGGGGCACTTCTGTAGTGGGAGGGATGGGGGGTGGTATTCT520.14327042292326767No Hit
AAGACAGGGCGATCTTCCCGCGGGCGATCTGCTCGCGGGCTCAGCC520.14327042292326767No Hit
CTGTTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.1405152224824356No Hit
GTAATTGTCTCCTTATCTGCAAAGTGACTTCTCAGCGGATTGCCTG500.13776002204160354No Hit
ATATGTGGGGAGTCTTGGCCAGCCAAAGGGGACTTGAAGGAGACGG500.13776002204160354No Hit
ATTACCGGGACGGGACCAACTCCGACGCTGCCAGCCGTGCTATTGA500.13776002204160354No Hit
AAAGCTGGGACTTCGGAGGAGCCCGACGCGGCGCGGTCGTTTTTAT500.13776002204160354No Hit
GGGTTAGGGACCAGGAGGGTGAAGAGTCCGTTCTAAAACTTTCTTT490.13500482160077146No Hit
AAACACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC490.13500482160077146No Hit
GATAGTGGGGAGACCATCCAAGAAGACCCCACAGCAGCTTCCGGAG490.13500482160077146No Hit
CACATAGGGGTGCTTGCAGGAGGTGGACGAGCCGCCCCAGCACGCC480.13224962115993938No Hit
CGCTGCGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA480.13224962115993938No Hit
CTCTGAGGGAGGCGTCATACTTCCCAAGAAGCGGCCATAGCCCAGA480.13224962115993938No Hit
CAAACTGGGGCCTCATTGCGTTACTTACCTCGACTCTTAGTTGTCG470.12949442071910733No Hit
CAATCAGGGTACCATTTCAGAATTGAGCATTGGTCCTCAAGGCTTC470.12949442071910733No Hit
TTATCAGGGACTGGACCATGGAGACTGTGGCCCAGTAGAGACCTTA470.12949442071910733No Hit
CGGCGCGGGGCTTACGGTAGGTCCGAATGGCACAAAGCTTGTTCCG470.12949442071910733No Hit
TAACTGGGGGATCTCAATACGGGGTGACTATCTGGATTAGGAGCAA470.12949442071910733No Hit
TTTGCAGGGGGCGCTGGACCGCCATGGGAGTCCGCTGTGTGGCAAT470.12949442071910733No Hit
CTGCCTGGGCCGTGGCTTTGGTAGTTCCTGGAAGGCGTCAGTGGAG470.12949442071910733No Hit
TTTAGTGGGATCCCCGAAGGGGCTAAGATCGCCCAAAATGTCATCC460.12673922027827525No Hit
TCTATAGGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC460.12673922027827525No Hit
GGTACCGGGCCTCTACTGAGCCTGTGTTGGTGGCAGAGAGGCACAT460.12673922027827525No Hit
ATCACAGGGGGGAATGGGATTCCAGAGCTGCCCCAGCTGGTGAGGC460.12673922027827525No Hit
AACGATGGGTTCTCAGTGGCGTTTGCTGAATGACAACAATTTAGGA460.12673922027827525No Hit
CCGACAGGTGTTTCTCCAGGTCTGACCATCTTGCGCTCCATATGAA460.12673922027827525No Hit
GATGCAGGGTTTTTGCCCAAGTTTCGATCCCACCAGGACTGGATAA460.12673922027827525No Hit
GCTGCACAAGAGAACGCCTCAGAATACCTGGCCATTACATCCGAGA460.12673922027827525No Hit
CAGGCTGAGACGGGCGGGACAGCAGGTCAGTGGATCTTCACCGGAA460.12673922027827525No Hit
CTTGGTGGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGC450.12398401983744317No Hit
TATAGAGGGGTTCTGCACACCACACACATCCACAGCTGCACCAGCC450.12398401983744317No Hit
TGCGCTGGGCACTCCAATCTGGTGCCATACTTCCCTTGGCTACCAA450.12398401983744317No Hit
CTGCTCGGGGGAAAGAAACGTGGTCCAGAGCTGGCAATAACCTATG450.12398401983744317No Hit
CTGTCAGGGGCTACCAGCTTGACTTTTATGATGAGATATAGATGTT450.12398401983744317No Hit
CGACCTGGCTCAGAGGGCTGCGCGGCTTCTTCTTCGTGGGTGCTCT450.12398401983744317No Hit
TTACAGGGGGCGGTCCCTGATGCTGCGGCGCCCGCTGGTCGGGCTG440.12122881939661112No Hit
AGCTTCGGGATGTTCTGAGGGTGAAAATTTTTATGTGTGTGTAAAA440.12122881939661112No Hit
ATTGTTGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCAG440.12122881939661112No Hit
ACTGTAGGGGGGGTGCAGTCGTCACGAGCGTCTGGCCAGCAGCTCG440.12122881939661112No Hit
CGACAAGGGGTGGTTACCAAGTCTGAGGGAGGTTTAGAATGAAGAC440.12122881939661112No Hit
TCAACTGGGGCGGCGGTGGTGGCGGCTGTCAGAGCTGGAGAGCGGC440.12122881939661112No Hit
CTGTCCGGGCATGTCTCTCTGGTTGCACATGCTAAGGAAGTACTCT440.12122881939661112No Hit
TGCACTGGCTCAGGCATGGGGACCCTGCTCATCAGCAAGATCAGAG440.12122881939661112No Hit
AGTCTTGGGGCCATCAATGTGGAGCAGGCCTTCCAGACAATTGCTC430.11847361895577903No Hit
TTATGCGGGAAAAGAGAAACCTGTAAAAGCAACATTCCCGTGAGCG430.11847361895577903No Hit
TGGCCTGGGATGCCTAGATGTGATACACGTTTCTGGAAACTGCCTC430.11847361895577903No Hit
TCCACCGGGACTCATGCATATCACATAGTTAATCCAAGTCCATGAC430.11847361895577903No Hit
GCATATGGGGATCTGCACCATCATCTGAGGGTTCACACCGCTGTAC430.11847361895577903No Hit
TAAGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC430.11847361895577903No Hit
CCGAATGGGAGCACAGCCCGCGCGCCGCCCGCCCCGGCTGCTGAGC430.11847361895577903No Hit
GTTAAGGGGTATCACTACCAGTGCTAGCCGCAGGCATTACTATACT420.11571841851494696No Hit
GCTACAGGGCATGCATATCACATAGTTAATCCAAGTCCATGACCAT420.11571841851494696No Hit
AGGCTAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT420.11571841851494696No Hit
CTGCCGGGAGTCTGTTTCCTTTTCCTAACAGACATTTTCTTTGGAC420.11571841851494696No Hit
TACCATGGGGTGTGCAAGGCGAGGTCTGTAAGCTGGAGCGGGGCAG420.11571841851494696No Hit
GAGCAAGGGGGACTTAGGAGAACACGCTGGAGATATGTGTGGCCGC420.11571841851494696No Hit
CTATCCGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT420.11571841851494696No Hit
GCATGGGGGGAGCGCGGTCGGGTTTAGGGGCAGCTGGCGGGAGGAT420.11571841851494696No Hit
TTTCGTGGGGTATTTGAGATGACTGAAAGAAGTCATTACAGACATC420.11571841851494696No Hit
TCTTTAGGGAGTCGGTTGTCGAGTCCCTTCTGTCCCAGTCGTTCGT420.11571841851494696No Hit
CGAAGAGGGCAGATATTGAAGAACCTGACCCTAATGGCAACTACCT420.11571841851494696No Hit
GCCAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA420.11571841851494696No Hit
CGCCATTGTCGCCACCATCTGGTTTCCTGTATGTGCCCACCGCGAG420.11571841851494696No Hit
TTCTACGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC420.11571841851494696No Hit
AGTTACGGGGATCTTTCGCCCTTAGAAAGAGAGCTCTGACGCCAGT420.11571841851494696No Hit
CTCTTTGGGGGCAGCTGGAAAGACAAAAGAGGGAGTCCTCTATGTA420.11571841851494696No Hit
GTGGATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT420.11571841851494696No Hit
TCTCACGGGGCCAATTGTTTTTTTCAATTATAGGAAAGGGAAGAAA420.11571841851494696No Hit
CGACTTGGGGCAAAGAGGATTTTATGAACATTTGCATTGAACCTGA420.11571841851494696No Hit
CACACTGGGCGTGAACGTCAGCTCGGCCATGGGCTGCAGCCAATCA410.11296321807411489No Hit
TCTACTGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC410.11296321807411489No Hit
CCAGCAAGGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGC410.11296321807411489No Hit
TCGGCGCGGGGCTCCTTCTGCCCAGTTTTCCTTGCTTTGTCCACAT410.11296321807411489No Hit
ATTAAAGGGACAGCTTCCCAGGACAACCAGCTTGCAGCTGTCGGGG410.11296321807411489No Hit
AACGAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTG410.11296321807411489No Hit
TTGCAGGGGGGAGGGCATTCAGGCACATGGCTGCCACTGCAGCACC410.11296321807411489No Hit
AAATGGGGGGCTCTCGCCAGGCGTCCTCGTTGGAGTGACATCGTCT410.11296321807411489No Hit
GTTCCGAGTGGCCGTGGACAAGCACCAGGCTCTACTGAAGGCGGCG410.11296321807411489No Hit
CTTGGGGAGACTTTAAACATGGGGTTGGCCGTTCCTCCTGCACACA410.11296321807411489No Hit
AGAGTAGGGTATTGATGGTGTAAGAAAAATTATTTTTGCACTACCA410.11296321807411489No Hit
CACGAGGGGATGACAAACATACGAAAAACACACCCATTATTTAAAA410.11296321807411489No Hit
CTGCCAGGGGACTGAGGTTCCTGTGTTTGGAAATCCGAAGATGCCT410.11296321807411489No Hit
GTGGTGGGGACTGCGAGCGGGCGGGCCACTCAGGACAGGAAGGCAC410.11296321807411489No Hit
CACTTTGGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCT410.11296321807411489No Hit
GCTCGAGGGATCATTCAGCACTTTATCTTGTCTGTTTGCAGTTGGA410.11296321807411489No Hit
ACACTGGGTCAGCCAAGATGGCGGCGCTCGCAATGCGGAGTGGCTA410.11296321807411489No Hit
ACGCAGCCTGGGCATTTGTCATTTTGTTGGCTGTTCTATGTTTGGG410.11296321807411489No Hit
TGTCCTGGGAGTCTCTTTATCCAAATGAGAAAGACAAGGAAAAAAT410.11296321807411489No Hit
CTACTAGGGGGGGATGCCGGAAGTGCCTCTCCGCCCCTGCTACTGG400.11020801763328282No Hit
CTATTGGGGGAGGCTCCTACAGTGGGCCTGTTCTGCACTTTGAGGC400.11020801763328282No Hit
TTCTTCGGGACAAAAGAATTTCATTCTAAACTTGATAATCCCAGCG400.11020801763328282No Hit
CACTAAGGGACTGCAAGAGAGCGGACAGATTAGTGTGTTGGAGCCG400.11020801763328282No Hit
AATCCTGGGGGAATTCTCCAGATTACTTCCATTTCCGCCCAAGCTG400.11020801763328282No Hit
TGGCTAGGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGC400.11020801763328282No Hit
ACTAATGTCGGGGGGGTGCAGTCGTCACGAGCGTCTGGCCAGCAGC400.11020801763328282No Hit
ACAGCAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC400.11020801763328282No Hit
GACAGTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT400.11020801763328282No Hit
GCCCCCTGGTCCCGCCGCCGTTGCCACCGCCGCTCCCGCCCCTCAG400.11020801763328282No Hit
GTACGCGGGGAGAGAGAAGCCTGCCAAGGGGGCCTGTCAGAAATGA400.11020801763328282No Hit
GGTTCCACCATCACCACTGACCTCTACCCAGCTGCCCTTAGTGACC400.11020801763328282No Hit
TTCGTTGGGGTGAGACATCATCTTACTCCCTTGCCCGAATTGTGAG400.11020801763328282No Hit
TAAGGCGGGTACATCAGCCACTATAATTATCGCAATTCCTACCGGT400.11020801763328282No Hit
GATTCAGGGGCACTGTTGCTTAATTTAGCTTTTCTATATGAATAAC390.10745281719245076No Hit
CACCACGGGGGTGCGTCCTCACTCTGAGTACCCCTCTGTCTACGCA390.10745281719245076No Hit
TCGAGTAGGGAATTTAAGTCAATTGAAAAGGTGGTTATGCATCCTA390.10745281719245076No Hit
TCCCCGGCAAGCACTACCTGGACCAGCTCAACCACATTCTAGGTAT390.10745281719245076No Hit
CCACCGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACAT390.10745281719245076No Hit
GCAGCCGGAGCCGCAGCCGCAGCAAGGACAAGCGGAAGGGAAGGAA390.10745281719245076No Hit
ATTTTTGGGGGGAATTCCAGCAGCGATTAAGGCAGAGGCGTTTGTA390.10745281719245076No Hit
GTACTAGGGAGTTGAGAGAAGCAGAGCACATGAGCACAGGATACTG390.10745281719245076No Hit
CTTAAGGGGAGTCATGCAGGTTTTAAGAAACTCCGGGTCGTGGCTC390.10745281719245076No Hit
GTTACCGGACAGTCGGTGTGTGTATTCCGAGAGCGGACTGCTAGGC390.10745281719245076No Hit
GCTTATGGGGGAGCCACAGACCTGGATGTGGCCAACTTCTACGTTT390.10745281719245076No Hit
TTAGTAGGGGTAGGATTAGATGTAGACACACGAGCTTACTTTACAT390.10745281719245076No Hit
TCGTGAGGGGGAAGGAGGAAGTGTTTTGCTGCGGGGTCCTGGCCTG390.10745281719245076No Hit
GTGTCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT390.10745281719245076No Hit
GCCGTAGGGGGGAATTCAGATAAAACGAATAGCTCGTAACCAAACA390.10745281719245076No Hit
TCTGAGCAGTCCGGACTTCCCAGAGGATGCCAAGAGAAGGGCAGAA380.10469761675161868No Hit
GCCCAAGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTC380.10469761675161868No Hit
CTAGCGGGGTAACATCAGTCTCCTCAAAATGTTGTGACCCCAAGGT380.10469761675161868No Hit
TTATCGCGGGATGCCACAACTAGATACATCAACATGATTTATCACA380.10469761675161868No Hit
TAGCCAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC380.10469761675161868No Hit
TCTGCTGGGATAAAAGGTCTGCGCCACCAGGCCCAGGGCTTAAGTG380.10469761675161868No Hit
ACACACGGGGGCACTGGGGCAGCTGTGCTGACGCTGGGCCCGGATG380.10469761675161868No Hit
TAAGTAGGGATTTCTGTCGGCTGAGGTGACTAAGATGGAAGCGTTT380.10469761675161868No Hit
CAGCTAGGGGACAGCGGTGTCATCTGTCTAGGTAGCGGCTTCACCG380.10469761675161868No Hit
AGAAAAGGGCGGCCGAGTCAGACGGCTAAGTGGGGAAAGCGCGCGA380.10469761675161868No Hit
AATCGAGGGGTACGTTAAGCACCAGGCACAAGTTGACCAATATCTG380.10469761675161868No Hit
ACACACACACACACAGACATACACAGACACACAGATAGCTAAATGA380.10469761675161868No Hit
ATCCCTGGGGACGAGAAGTTGTTCACCAAGGAGCTGGACCAGTGGA380.10469761675161868No Hit
AGTCAGGGGGGTTTTACTAGGCTAGACTAGCGTACGAGCACTATGG380.10469761675161868No Hit
GTAGCAGGGATGCCACAACTAGATACATCAACATGATTTATCACAA370.10194241631078661No Hit
TCTCATGGGGAGAAACAGTGTTGTCAGGATCATCTCACTCCCTTCT370.10194241631078661No Hit
TATTAAGGGGCATACGGCCGATTGTCGCAGCCCGGGTCGATTATAA370.10194241631078661No Hit
GTTCACGGGGGGAAATCACCAGATACGAACTACCTATTCATGGGGG370.10194241631078661No Hit
TTTAGTGGGGGCGGCGGGGCGCAACGGTGTCTCCTTCACTTCGCCC370.10194241631078661No Hit
TTCTAGGGGATGCCACAACTAGATACATCAACATGATTTATCACAA370.10194241631078661No Hit
TATAGCGGGATTTGTTCCATCTCTTTTCCTTGTTTCCCAATCCTTT370.10194241631078661No Hit
GTCTCCGGGGATTCGGAGCTGCAGGATCCGTCCGAGATGGCAGAGG370.10194241631078661No Hit
CAGCCTCCACCCCAGGCAGGCAGGCAGGCAGGCAGCCAAGGAGAGA370.10194241631078661No Hit
CTATCTGGGGACGCCGAGAGATGGTGTCCTCTCTGTGTTCCTCCTA370.10194241631078661No Hit
GAGACTGGGACACACAGGCCCGGTGTCGTTTCCGCCCGCCGTTGCA370.10194241631078661No Hit
TTTCGCGGGACAGCAGAGCCATTCGCCAGCTGGAACTCCCACTGAG370.10194241631078661No Hit
TTAAAGGGGAGTGCGAGGAGACCAGGACGATGCAGCTAGCATGGAG370.10194241631078661No Hit
AAACTGGGGAAGTTTTCAGTGGAAGCTCTGGATTAAGAGCTCGGCT370.10194241631078661No Hit
GACCTAGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT370.10194241631078661No Hit
TTATTCGGGGCTGACTTGCAACCCTACACGGAGGTAATATTAAATG370.10194241631078661No Hit
TTGAATGGGCTGTTCCAGAGGACTGTTTTTCCAGTTGGGAACGATT370.10194241631078661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)