FastQCFastQC Report
Sat 31 Dec 2022
SRR5843680.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843680.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48583
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGACAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC710.14614165448819547No Hit
GCACCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC560.1152666570611119No Hit
TTGATAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT560.1152666570611119No Hit
CACAAAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTCATG530.10909165757569521No Hit
GTCAGTGGGGACAAATAGAAGAGGAGTTGTGGGAAGAAGAATTTAT530.10909165757569521No Hit
GGCTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC530.10909165757569521No Hit
ATCAGTGGGGAACACAGGACAACCACAGCACTCCTCGATCTGCTTC530.10909165757569521No Hit
TCAGACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC520.10703332441388963No Hit
CTTTTGGGGTGGAGAAGTAGGAAAATCTACCACTCACACAATCCCT510.10497499125208405No Hit
CGCAATGGGAGTGAGAGAGAAGCCTGCCAAGGGGGCCTGTCAGAAA510.10497499125208405No Hit
CTAACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.10497499125208405No Hit
AGCTTAGGGAGGCCAGCCCCTAGCCGCAGCGTGTCTCAGTCGGTTG500.10291665809027849No Hit
CACTTTGGGGGGTTCCTGGCTCCCTCTTTCTCCCCAGCCCAACTTG500.10291665809027849No Hit
CTTCACGGGAGCATTATCGATTTGAGATCAGTTGAAATTGCTTTAC500.10291665809027849No Hit
GACATGGGGGGATTGACTACAGAAACTTAACAGACATGGATTTTTT500.10291665809027849No Hit
CTATCGGGGAGGAGGGAAGATGGCGGACGAGGAGAAGCTGCCACCA500.10291665809027849No Hit
ATTTACGGGAGAATGAGCGTGACAAGTTCTTGGGACGTGTTTCGTT500.10291665809027849No Hit
TTCATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.10085832492847294No Hit
CGTTGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.10085832492847294No Hit
TATGTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.10085832492847294No Hit

[OK]Adapter Content

Adapter graph