FastQCFastQC Report
Sat 31 Dec 2022
SRR5843679.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843679.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46115
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGACGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC630.13661498427843435No Hit
GACATGGGGGGATTGACTACAGAAACTTAACAGACATGGATTTTTT550.11926704976688712No Hit
CAACTCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.11926704976688712No Hit
GCGACAGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC530.11493006613900034No Hit
GCACTGGGGAACCCGGGTTTTAATACACTTACTGCATGAGATTGTT520.11276157432505692No Hit
CACAAAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTCATG510.11059308251111352No Hit
GCTTCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.11059308251111352No Hit
CTAACTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC510.11059308251111352No Hit
CTGAACGGGAGACGTTCTCGCCCAGAGTCGCCGCGGTTTCCTGCTT510.11059308251111352No Hit
TTTTTAGGGGGGACCTGGAGGACGTGCTGTATTTCAAGCTCAATGC510.11059308251111352No Hit
CGCCGCGGGGTCTTTCCAGAATCTTCTGGCAAAGATCTGCTTCTAC500.10842459069717013No Hit
CGTTGAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC490.10625609888322671No Hit
TCCATAGGGAGATCTCAGAGCTAAAGGACAGCCTGGTCTTCAGAGA480.10408760706928331No Hit
TGCATTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.10191911525533992No Hit
GGCTTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC470.10191911525533992No Hit
ACTGGGGGGATAAAGAGACCTCTTACAGCTTCCCTTCAGGGCAGGG470.10191911525533992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)