FastQCFastQC Report
Sat 31 Dec 2022
SRR5843675.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843675.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56057
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTTAGGGGAGCCGTTTGCAGGTGTAAAGTTCATTAGTCATTTGT730.1302245928251601No Hit
ATCGTAGGGGGGTGTGAGCACCTCTGTGCCTTTATTGGTGTTATTT640.11416950603849653No Hit
TTAGTTGGGGTGCCTGGGGCATGCAGGTGTGGGTGACCTTTATCTC620.11060170897479352No Hit
CTTATCCCTTAGTGAAGGTGAATACCAGAAGTAAACACAGCCTCTG610.10881781044294199No Hit
CAAATTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG590.105250013379239No Hit
GCTAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.10346611484738748No Hit
TAATCTGGGGAAAATAAAAAGAATGCTAGCAGAGCAATATAGCATT570.10168221631553598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)