FastQCFastQC Report
Sat 31 Dec 2022
SRR5843670.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843670.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58394
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG750.12843785320409631No Hit
GACATGGTGCAGCCTCCACAGGTCACAGAAGTTCTTTAAGCAAATT710.12158783436654452No Hit
CTACGCGGGAGGGGCAGCGGGTGACGGTACGATGGCTGCGCAGCGG690.1181628249477686No Hit
AAACCTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT660.11302531081960475No Hit
CTTCGGGGGGGTAGGGCCAAGTGCTAGAACCTGGTGGGTGTGATTT660.11302531081960475No Hit
CGGCATGGGATCTGTTTGGGATGGGTATAGAGAAAAAAGAAACTGT650.1113128061102168No Hit
TGCAATGGGCGCATTTGCCATCCCTGATAAACCACGGCACATCCAA650.1113128061102168No Hit
GCTCACGGGGAGAGTGAACCGCGGAGAAGGTGAAGATGGCTGCCGC640.10960030140082885No Hit
TAACCAGGGATGAACTCTTAACCAAACCGGGAGAATTTATCCACAC640.10960030140082885No Hit
CCCAATGCTGAGCTGGCCTGGTGCCAGGAAGAGCACAAGAACCAAG630.1078877966914409No Hit
CCTCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.1078877966914409No Hit
AAATAGGGGAAGTCATTTCAAGTAACGTGCATTCGGACTGAAATTT620.10617529198205294No Hit
CGAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10617529198205294No Hit
TACACAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC610.104462787272665No Hit
CAGGTGAGGCCGGGGCAGGGGGTGCCCTTCACCGCTGCCTCTTCTG610.104462787272665No Hit
CCAGCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT600.10275028256327705No Hit
ATATTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.1010377778538891No Hit
TGTATGGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA590.1010377778538891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)