FastQCFastQC Report
Sat 31 Dec 2022
SRR5843669.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843669.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55397
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACATGGTGCAGCCTCCACAGGTCACAGAAGTTCTTTAAGCAAATT670.12094517753668971No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG640.11552972182609167No Hit
CTCTAAGCACGGGATGACCCACCAAACTCATGCATATCACATAGTT630.11372456992255899No Hit
AAACCTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT620.11191941801902631No Hit
CTCCTAGGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAA610.11011426611549362No Hit
AAGACTGGGGGGCAGCGTTGGCCTTTGCAGCTATTCAGCTGCTGGG600.10830911421196093No Hit
GATTAAGGGATGAACCCACTGATCACGGGGGTCTTTGGAGCTACTG580.10469881040489556No Hit
CGAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10469881040489556No Hit
TTTCCTGGGACCCCTGGCTCAAATATTTGGTCGCCCTCGGCTGCGC570.1028936585013629No Hit
TTGTCTGGGATGAAGAAGGCTCCAATAAACGTCTTTTTAATGTTGA570.1028936585013629No Hit
CAGCAAGGGACCTGTAACTTTTTAGGAGTCTATAAAATAACTACCA560.1010885065978302No Hit
AGCTCTGGGAGTGGACAAAGGACTTAAATGGTCTTTTAAAACTGGG560.1010885065978302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)