FastQCFastQC Report
Sat 31 Dec 2022
SRR5843666.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843666.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47900
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCCGGGGCCAAACTGTGGCACTACCTACCCATATCTTCCAGGC670.13987473903966596No Hit
CCATCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.13778705636743213No Hit
CCTTCTGGGAAGCACCGTGTGATTGGAAGCGGATGCAATCTGGATT650.13569937369519833No Hit
ATTCCCGGGAAGATTTCATGCAGACACCATTGCTGTGGAGCCGATT650.13569937369519833No Hit
CGCACGGGGCAATGAAGATGGCTCCTTTATTGGCCAGTACACTGTC630.1315240083507307No Hit
GCTTCCGGGACTCTCAGAATTTCTAACTACCAGTCGTAAAGTAGGC630.1315240083507307No Hit
CTCTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.12943632567849686No Hit
CTAATTGGGGTCAGCATCTTGCAGTAGGAACTGTTCTCCTCCCCAG610.12734864300626306No Hit
CTCTGTGGGGATGTCCAGTGTTTGGGATCTATGGGCAAGTAGTTTT600.12526096033402923No Hit
GTTATCGGGATCAAGACAAACATAGTTCTTCTTATGCCAGAGATTA600.12526096033402923No Hit
CTACTAGGGTCATGATCCACTGCTGGAAAAAGGATCCGGAAGAGCG580.12108559498956158No Hit
GTACAGGGAGACTCGGCGCGGGAGGACCCGGGCAAGCACCGGCGGC580.12108559498956158No Hit
ATTAGTGGGCGGCCCTGGGAGTCCGATGGCTGCAGAGGACAACCCG580.12108559498956158No Hit
CCAGATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA570.11899791231732776No Hit
GTCACTGGGACTGGGTGTTAAAACCATTCCAGATGACACACCCATG560.11691022964509395No Hit
ACGAGTGGGGGAGGCCTGGGGAAAATGGAGTGACTGCAGCCGGCTG560.11691022964509395No Hit
GGCCAAGGGGGAGATGGTGGCAGCTCCAGTTCCGGAACAGTACCTC560.11691022964509395No Hit
ACAGCGGGGGGACCCCAAGGTGATAGTGGAGATCCACGGTGTGGGC560.11691022964509395No Hit
TCTAGAGGGACTTAATAAAAGGTCTACTCAGCCCTTCACGAAAGAG550.11482254697286012No Hit
TACACCGGGACTGGGTAAAGACCTGTTGTGTAAGCATGAGTACGTG550.11482254697286012No Hit
CGTAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.11482254697286012No Hit
CTACAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC550.11482254697286012No Hit
CAGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.11482254697286012No Hit
GCATAAAGGGAAAGGACTACGATATGGTATAATTCTATTCATCGTC550.11482254697286012No Hit
CACGCTGGGATCTTACTGGCTCTTTGGAAGTAAAGAAAAATGAAAA540.1127348643006263No Hit
ATCACTGGGGCACTGGAGCTGCCACGGTTCTTGGTCCCTACGCCTG540.1127348643006263No Hit
TGTAAAGGGCTCGCGCCGGGCGGCGGACAGCCGAGGACGACGGGGC540.1127348643006263No Hit
CTCTGCACGGGGGAGCGAATGATCAAGCTCTGTAAGAGAAGACACA540.1127348643006263No Hit
CACTCAGGGGATTTCTGAAGCTCAGTGAACTTGAGAGCCCGGGTTC540.1127348643006263No Hit
CTCGATGGGGTAGTAGGGTACCAACCTACCCCACTGCTTCCTAAGG540.1127348643006263No Hit
AGTTAGGGGAGCTGGCCATAGTGAAAAGATTTCCCCTTTCAACCAG540.1127348643006263No Hit
ATTGCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.1127348643006263No Hit
AGCCTAGGGAGAAATGGGTGATGTAAAACTTGAGAAGCAGGAAGAG530.11064718162839249No Hit
ATTTTTGGGTATGGCCTACCCATTCCAACTTGGTCTACAAGACGCC530.11064718162839249No Hit
GTCTATGGGCTCTGTGTAGACTTTCCTGGCTGTGTTTGAACTCACT530.11064718162839249No Hit
GATTCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC530.11064718162839249No Hit
CACATAGGGGTAACACGGAAGTCTGCACGTGCGAGCGGCCGGCCAG530.11064718162839249No Hit
TACTCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.11064718162839249No Hit
ATTCTTGGGATGCCAGACACCTGCCAGCCTTCGTGAAGAGGTTGGG530.11064718162839249No Hit
ATTGTGGGGTCACTGTGTTTAGGTCATTAATGAATTCCTTATGAGT530.11064718162839249No Hit
GCGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA530.11064718162839249No Hit
TAGTATGGGGAGACACCCAAGGCTACGGCATTGCACCTGACACTGT520.10855949895615866No Hit
GTCAACGGAGAGTCGGCCTGCTGTCATTGCTGGCCCCAGGGCCCCT520.10855949895615866No Hit
TATGCAAGGGACCACTAATTGAAGGAGTGAGAAGAGAACAGCTCGC520.10855949895615866No Hit
GCACATGGGACAGAGTACACAGAAGGGAAAATGATACTGGTTAGCT520.10855949895615866No Hit
GCTGTCTGCACACACAGACTTCTGCAGTCGTGAGAAGCCTCCCAAC520.10855949895615866No Hit
TCAGTAGGGGGTGGGATAGGGTCTTACGTAGCCCAGGCTGGCTTTG520.10855949895615866No Hit
ACAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.10855949895615866No Hit
TCTAAAGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCT510.10647181628392485No Hit
TGTTCAGGGATGGGGCCGTGGCCCTTTTGGTTGTTTTTGGTCATTT510.10647181628392485No Hit
GCTTCGGGGACCTCGCGTGGTGAATAAGGAAGCCGGGAGCGGCCCT510.10647181628392485No Hit
ACACGCGGGCTGAGACCTTGAGAAATGACCTTCAGGAACATGAGGA510.10647181628392485No Hit
CAAACCGGGGGGGCGCAGAGCTCGGCAAGGCGCTGGGACGGTGGGG510.10647181628392485No Hit
CCTGCAGATAGAAATGAGATGGAGGCTGGTGGCCAAGCTAGTCCTA510.10647181628392485No Hit
GTAACCGGGGTAGAAGGTCACCACTACGGCCCTTCATCACCTCAGA500.10438413361169101No Hit
CTCTTAGGGGACCTCTGTGGCTTTGGGTACAGCATTGGTAATGGAA500.10438413361169101No Hit
TGATCAGGGTATGCCACAACTAGATACATCAACATGATTTATCACA500.10438413361169101No Hit
TACCACTGGGGGTCCTCGGAGTCCTGCAGTGCCATGGCTACCGGTG500.10438413361169101No Hit
AACCAAGGACGCAGAATGCAGGAGCACATTGTCTGCCTAACAGATG500.10438413361169101No Hit
AATGTGGGGGAACTCAAGTAGACAAATTTCTTCTCTTCCTGTCTAT500.10438413361169101No Hit
CGCCGAGGGCCCACCTGGCGTGGATCAATACCCCACGGAAAGAGGG500.10438413361169101No Hit
ATTCAGGGGATAAAGAGTGAGTTAAATGATAATTTGAATAAGAAAA500.10438413361169101No Hit
AATCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.10438413361169101No Hit
TACATCGGGATCTACAAGACATTATAGAGCACCGGAAGTTATTTTA500.10438413361169101No Hit
TATGTTGGGGGAGAAAGAGCTCTTCATTTGGAGCAGTCCTTCAATC500.10438413361169101No Hit
GCCTATGGGATGCATCTGACTCAGAAAATGTGTGCATTTCTATAGT500.10438413361169101No Hit
TCTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA500.10438413361169101No Hit
CGCTTAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT500.10438413361169101No Hit
AGCAGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCCTC500.10438413361169101No Hit
AAGGCTGGGGTATTTCTGGAGTGTTTGGGACTTTGCACAATTTGCA500.10438413361169101No Hit
TCTTTTGGGCTTTTCTGACCCTTTCCGGGCGTTCAAGATGTCGAAG490.1022964509394572No Hit
GCTGCTGGGGTCGCAGCCCGGGTCGATTATAACAACGGTGCAATCT490.1022964509394572No Hit
CATTTGGGGCAGGAATTGTTTGATGTGCCACAGTTGGCTTATGAAT490.1022964509394572No Hit
TTCAATGGGCAATAAGAGACGAAGAAAGACAATAGAGTTGCAGGAC490.1022964509394572No Hit
CTCATTGGGCCACCAGCTGGACATCGACAACCCGCAGAGCATTCGC490.1022964509394572No Hit
GTCCGTGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAG490.1022964509394572No Hit
TAGGCGGGAAATTGTTACTGTGGAATGATTTTCTTGCCAAATAACT490.1022964509394572No Hit
TCTGCCGGGGAGAAAGCAGCAGTTGAAGTAGAGCTCTGAAGTTCAC490.1022964509394572No Hit
CTGCCTGGGAGAAGTCTTGGATTAGAGTTGCTTCCTAGAGCGGTTT490.1022964509394572No Hit
AGTCGCGGGCATGTCCGCAGCCATGAGGGAGAGGTTCGACCGGTTC490.1022964509394572No Hit
GTGTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10020876826722339No Hit
TGCTCAGGGGCAGTCACAGAATCAAGAGGCAGCAAGTGCCCTGGTG480.10020876826722339No Hit
AACAGGGATTGCAATAGAAAGTGCCAGAAAAAAACAAGAAGGGATT480.10020876826722339No Hit
TTCACCGGGCAGAGCAAAGAAGAAATACGTGACGAGAGTGTGTGGC480.10020876826722339No Hit
GCCCCAAAGGATCAGATGGACAAAGAGTGGGACGAGTTTCAAAAGG480.10020876826722339No Hit
GGCACTGGGCGAGTCGCTGCCCTGGATGCAGGGCTGGCCTGGGCGA480.10020876826722339No Hit
ACGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA480.10020876826722339No Hit
TATGCTGGGGGTTGTGAGTGACGATGACAGTGAGGAGGAGCAGGAG480.10020876826722339No Hit
AATTCTGGGGTGTAAGCAGGATCTGGGAAGCCAGCATTGAGAGAGT480.10020876826722339No Hit
TTACCTGGGATTTCCATTGCAGAATGCTCATGAGACATATACAGGG480.10020876826722339No Hit
GCAAATGGGTACGATATGGTATAATTCTATTCATCGTCTCGGAAGT480.10020876826722339No Hit
ACATGTGGGGCTCTTCCGATCTTGATGCGGGGCAAAACGGGACTGA480.10020876826722339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)