FastQCFastQC Report
Sat 31 Dec 2022
SRR5843665.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843665.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45497
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGTGGGGTCACTGTGTTTAGGTCATTAATGAATTCCTTATGAGT650.1428665626305031No Hit
TATGCTGGGGGTTGTGAGTGACGATGACAGTGAGGAGGAGCAGGAG620.13627272127832604No Hit
CGCTTAGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT620.13627272127832604No Hit
TGCACCGGGGGGATTGGCTCCGGGGGCGCGGCGAGGAGAGACATGA590.129678879926149No Hit
CCAGATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA570.12528298569136426No Hit
ACGAGTGGGGGAGGCCTGGGGAAAATGGAGTGACTGCAGCCGGCTG550.12088709145657957No Hit
AGTCATGGGATAGTCAGGCTAACAGCTGACTTCAATTGTCACAGCC550.12088709145657957No Hit
TGCTCAGGGGCAGTCACAGAATCAAGAGGCAGCAAGTGCCCTGGTG550.12088709145657957No Hit
ACTGCCGGGGCCAAACTGTGGCACTACCTACCCATATCTTCCAGGC550.12088709145657957No Hit
AATACTGGGGTATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCA550.12088709145657957No Hit
ACATGTGGGGCTCTTCCGATCTTGATGCGGGGCAAAACGGGACTGA550.12088709145657957No Hit
CCTGCAGATAGAAATGAGATGGAGGCTGGTGGCCAAGCTAGTCCTA550.12088709145657957No Hit
CACTGGGGGGAGCCGGCTTGGGGCGGTACTGAGCTGGGTCACGTAG540.1186891443391872No Hit
AAGCACGGGAGCCTGCAGCAGGGCAAGATGTTTTTCTTCATCGGCC540.1186891443391872No Hit
CTCTGTGGGGATGTCCAGTGTTTGGGATCTATGGGCAAGTAGTTTT540.1186891443391872No Hit
ACAGCGGGGGGACCCCAAGGTGATAGTGGAGATCCACGGTGTGGGC540.1186891443391872No Hit
CTAATTGGGGTCAGCATCTTGCAGTAGGAACTGTTCTCCTCCCCAG540.1186891443391872No Hit
GCCAGGGGGAGAGATGACATCCACTGGAACTTAGCTTTGAAAACTC530.11649119722179485No Hit
CCTTCTGGGAAGCACCGTGTGATTGGAAGCGGATGCAATCTGGATT530.11649119722179485No Hit
ACACGCGGGCTGAGACCTTGAGAAATGACCTTCAGGAACATGAGGA530.11649119722179485No Hit
TATGTTGGGGGAGAAAGAGCTCTTCATTTGGAGCAGTCCTTCAATC530.11649119722179485No Hit
CTCTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.11429325010440247No Hit
CGCACGGGGCAATGAAGATGGCTCCTTTATTGGCCAGTACACTGTC520.11429325010440247No Hit
CATTTGGGGCAGGAATTGTTTGATGTGCCACAGTTGGCTTATGAAT520.11429325010440247No Hit
ACATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA520.11429325010440247No Hit
TAATCAGGGAAGCTCCAAAGAGCCAAAGTATCAACTCACGGATCAT520.11429325010440247No Hit
CTTGCGGGGGGTTTAACTATGCCAAACCTCCAGATGAGCCAGTGTT510.11209530298701012No Hit
TGCGGTGGGAGAAGCAAGATGGTGAGTGTGGTTTCTGGGCTCTGTA510.11209530298701012No Hit
ATTACCGGGGTGAAGCGGTGGCCATCTATGGCATCATCATGGCAAT510.11209530298701012No Hit
GATCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA510.11209530298701012No Hit
TAGTATGGGACAACAAGGGCAGCAACGATGCGTACCACAGCCGCGC500.10989735586961777No Hit
TGCCTCGGGGGGCTGTAACCGCTGGAGGCTTCTGCTGACGGCGTCG500.10989735586961777No Hit
TACCACTGGGGGTCCTCGGAGTCCTGCAGTGCCATGGCTACCGGTG500.10989735586961777No Hit
GCGCCCGGGGGGCGAGATGGCTTCAAGGTTACTTCGCGGAGTGGGC500.10989735586961777No Hit
GCTTCCGGGACTCTCAGAATTTCTAACTACCAGTCGTAAAGTAGGC500.10989735586961777No Hit
GCTGTCTGCACACACAGACTTCTGCAGTCGTGAGAAGCCTCCCAAC500.10989735586961777No Hit
ACAAAAAGGACTACGATATGGTATAATTCTATTCATCGTCTCGGAA500.10989735586961777No Hit
GTGTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.10769940875222542No Hit
GATTCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC490.10769940875222542No Hit
TGACTCGGGCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGA490.10769940875222542No Hit
GCAGAAGGGTATCGCGGCCCTAGCAATCGTTCACCTCCTCTTCCTC490.10769940875222542No Hit
CGTAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA490.10769940875222542No Hit
GGCCAAGGGGGAGATGGTGGCAGCTCCAGTTCCGGAACAGTACCTC490.10769940875222542No Hit
CGCCGTGGGGACAGCATGACAGGTTTGCTCTGCTTCTGCAGAGTGG490.10769940875222542No Hit
CAACATGGGATGGCCCAAAAACTATAGTATAAGTTTGAAATTTCGG490.10769940875222542No Hit
CTCTTAGGGGACCTCTGTGGCTTTGGGTACAGCATTGGTAATGGAA480.10550146163483307No Hit
AGACATGGGTACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAA480.10550146163483307No Hit
CTATCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC480.10550146163483307No Hit
CGCCGAGGGCCCACCTGGCGTGGATCAATACCCCACGGAAAGAGGG480.10550146163483307No Hit
GTCTGAGGGGCTGCATACAGCAGCACAGTGGGACTTCGAGCAGCAA480.10550146163483307No Hit
ACAACCGGGGCAATTAAACAGACTCAGGTAACTGTTCAGAGACTTG480.10550146163483307No Hit
ATTCAGGGGATAAAGAGTGAGTTAAATGATAATTTGAATAAGAAAA480.10550146163483307No Hit
CGCCTTGGGAATGCAAATTGTAGGAATTTACATGTTTACAAATCAT480.10550146163483307No Hit
GCTACCGGGGGCCCCCACTTCTTCCTCTTTCTTGACTCCATCTTCG480.10550146163483307No Hit
TATGCAAGGGACCACTAATTGAAGGAGTGAGAAGAGAACAGCTCGC480.10550146163483307No Hit
CTCCTAGGGGGGGGTGACCCTGAGTATTGAGACCCTGCAGCGATGC480.10550146163483307No Hit
TGCTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10330351451744071No Hit
GCTGCTGGGGTCGCAGCCCGGGTCGATTATAACAACGGTGCAATCT470.10330351451744071No Hit
ACGCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA470.10330351451744071No Hit
GCCTATGGGATGCATCTGACTCAGAAAATGTGTGCATTTCTATAGT470.10330351451744071No Hit
GCACATGGGACAGAGTACACAGAAGGGAAAATGATACTGGTTAGCT470.10330351451744071No Hit
ATTCCCGGGAAGATTTCATGCAGACACCATTGCTGTGGAGCCGATT470.10330351451744071No Hit
TTCGCTGGGGAATTCCAAGTGGCTTAGTCTGGGGAGGTGGCCTGGG460.10110556740004835No Hit
TCTAAAGGGTGTCATATCAAGCAGGCCTTGGATTGGTAACTGTGGT460.10110556740004835No Hit
TGTTCAGGGATGGGGCCGTGGCCCTTTTGGTTGTTTTTGGTCATTT460.10110556740004835No Hit
TCCAATGGGATAACATGCGAGTGGAAGACTACGAGCCATACCCCGA460.10110556740004835No Hit
TAGCGAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.10110556740004835No Hit
CTCTGCACGGGGGAGCGAATGATCAAGCTCTGTAAGAGAAGACACA460.10110556740004835No Hit
CACTCAGGGGATTTCTGAAGCTCAGTGAACTTGAGAGCCCGGGTTC460.10110556740004835No Hit
TTTTTAGGGGGGAGCTAATGGGCACCATCTTTTCCTGTGAAGTCAC460.10110556740004835No Hit
TGTAATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC460.10110556740004835No Hit
TCTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA460.10110556740004835No Hit
GTTATCGGGATCAAGACAAACATAGTTCTTCTTATGCCAGAGATTA460.10110556740004835No Hit
ACACCCCTGTATTTTGCCTGGAGTTTAATCATCACTAAGATACAGA460.10110556740004835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)