FastQCFastQC Report
Sat 31 Dec 2022
SRR5843662.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843662.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62413
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA910.14580295771714227No Hit
CGTCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA890.14259849710797431No Hit
GCCCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.12176950314838256No Hit
GCGCGGGGTCAGGTGCCAGCATATTGTGCACAGAGGCAGAACACAT700.11215612132087867No Hit
TAAGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.11055389101629469No Hit
CTTGAATTTTGATGATCCACTGAATATTGAAGCTGCAGAACATCAT670.10734943040712672No Hit
TCTCGAGGGACTGCATCAGTAAAAATGAATGGATTCAGTTTAATCA650.10414496979795876No Hit
GACGCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC630.1009405091887908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)