FastQCFastQC Report
Sat 31 Dec 2022
SRR5843660.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843660.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65386
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCGGGAGGACTGGTAGGAAAATAAGCAAATGTCAATGCAAACCC880.1345853852506653No Hit
ATTCCAGGGGTTCGTCGACTTCTAGTGTGGAGACGAATTGCCAGAA780.11929159147218057No Hit
GAGTATGGGACCAGCAAGAATTCCGGCATTTTAATCTACCACTCTT770.11776221209433213No Hit
CGCCGGGGAGCCAGAGACAGAGTTTGTCTTCCCCCTGTCCCATCTG750.11470345333863519No Hit
CACACAGGGGTCCTTGCTATGGCAACCTGGTCAGTCTGTATTCGTA750.11470345333863519No Hit
TATGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA740.11317407396078671No Hit
ACGCTGGGAAGGATAACCTGGGCTACTCACTAAAGGAGCCAGTACA730.11164469458293824No Hit
GCTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.11164469458293824No Hit
TAGTCAGGGGTCTGATTTTCTTCCTTGAGCTCAGAAAGAAGGATCC730.11164469458293824No Hit
CGTTAAGGGGACAAGATGTGAGTGAAGTAAATGCTTAATTGTTTGG720.11011531520508978No Hit
ATGTCAGGGACCCGCTGTCTGAAGAGGCCTGGCACACTCACCAGTT720.11011531520508978No Hit
CATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.1085859358272413No Hit
GTCGCGCGGGATCAAATGTGAAGTTCATCTTGCAACATTTACTATG710.1085859358272413No Hit
TTGACGGGGATCACCACTTATGAACTCAGAAGCTCTTGCTTTGACA710.1085859358272413No Hit
ACAAGGGGGGTCATACATTACATTCTTAACTCATTCAAGGAACTTA710.1085859358272413No Hit
CGATTTGGGGTGACTAAGCCTCTTCCCAAGCTCCATCACGATTCCT700.10705655644939283No Hit
TGTAAAGGGATCCAAAAGATGTGGAGGAATTGGGAAAGGGAGAAGA700.10705655644939283No Hit
TTCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA700.10705655644939283No Hit
GGCTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC690.10552717707154437No Hit
CATGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT690.10552717707154437No Hit
ACATTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC690.10552717707154437No Hit
ACGTCAGGGACCTCGCCCTATGCCCAGCTCCAGAATGGGTCTCAAC680.1039977976936959No Hit
GTATACGGGAGTCTAGAAGCCGATGTAGGACCGTATAGGTAGATCC680.1039977976936959No Hit
TTATGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.1039977976936959No Hit
CGTTAAGGGGGGAGGTCGGTAGGGAAAGACGACTAAAAGACAGGTC680.1039977976936959No Hit
TCAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.1039977976936959No Hit
TTTAGCGGGATGGCATGAAAGGCATTGTCCAAAGAATGCCAAGTGC670.10246841831584744No Hit
CACATGGGAGCAGGGCTCAGTGATGGAGACTGGGGGGCCCTTGCTG660.10093903893799896No Hit
CGAACCGGGAATCTTCTGGTTGGTAAAAGATATGTTCCGGAGAATA660.10093903893799896No Hit
ATACAAGGGCCGGGTCCGACGCACCGATGATACACCGGTGGTTCTT660.10093903893799896No Hit
TAAGGGGGAACGATGCTGCCATCACAACCTTCTCTGTCCTTGACCT660.10093903893799896No Hit
GTTGCTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT660.10093903893799896No Hit
CGTGCCGGGGCTACTTCGGAGGAGCCCGACGCGGCGCGGTCGTTTT660.10093903893799896No Hit
TCCCTAGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT660.10093903893799896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)