FastQCFastQC Report
Sat 31 Dec 2022
SRR5843659.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843659.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62237
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCGGGGAGCCAGAGACAGAGTTTGTCTTCCCCCTGTCCCATCTG800.128540900107653No Hit
TAACCTGGGGTGGCCACTTGGCTCTGGGTAGCCAATGATGAGAACT800.128540900107653No Hit
TAGTCAGGGGTCTGATTTTCTTCCTTGAGCTCAGAAAGAAGGATCC760.12211385510227035No Hit
ATACAGGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA720.11568681009688771No Hit
CGTTAAGGGGGGAGGTCGGTAGGGAAAGACGACTAAAAGACAGGTC720.11568681009688771No Hit
GGCAATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC700.11247328759419638No Hit
ATACAAGGGCCGGGTCCGACGCACCGATGATACACCGGTGGTTCTT700.11247328759419638No Hit
TGTAAAGGGATCCAAAAGATGTGGAGGAATTGGGAAAGGGAGAAGA700.11247328759419638No Hit
CTTCCTGGGAGAGGCATCGTGCTGCTGGAGGAGCTGTTGCCCAAAG690.11086652634285071No Hit
ACGGGGGAGAACCAGAAACTAACTTGTGTCCCATGTATCCCAGTGC690.11086652634285071No Hit
ACAAGGGGGGTCATACATTACATTCTTAACTCATTCAAGGAACTTA690.11086652634285071No Hit
CATGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.10925976509150505No Hit
TATTTAGGGGTACCTCTCTGTGTGTGTCCCACTGTGTGCTGACACA680.10925976509150505No Hit
GGCTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.1076530038401594No Hit
ACCACTAGACAAGGGTTTTTCAGAAAATGGCGACACAAACACCCCA670.1076530038401594No Hit
CCAAGTGGGGTACTTCATAAGCCTCCGCAGAACATTTCCATTGGGA670.1076530038401594No Hit
CACATGGGAGCAGGGCTCAGTGATGGAGACTGGGGGGCCCTTGCTG660.10604624258881373No Hit
CTACTTGGGGAAGGCTTATTTAAACAGTTTGAAAAAGGAAATGAGG660.10604624258881373No Hit
CACCGGGAGGACTGGTAGGAAAATAAGCAAATGTCAATGCAAACCC660.10604624258881373No Hit
TACAAAGGGGTTCCTTGCCGTGGAGTGCTGGGAAGCGGCAGCGGCA660.10604624258881373No Hit
TATGCTGGGACCACAAGATGTTCCCTGTCCTGGAGGTAGTAATGCC650.10443948133746807No Hit
CCAACCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC650.10443948133746807No Hit
TACTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATCC650.10443948133746807No Hit
CGTGCCGGGGCTACTTCGGAGGAGCCCGACGCGGCGCGGTCGTTTT650.10443948133746807No Hit
TATATAGGGAAGGAGTACGTGGGGCAGGTGCTCAAAGGGCTGGGCA640.1028327200861224No Hit
AAATTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.1028327200861224No Hit
GCTGTGGGACAGCTTCCTGCCACAGAGTCAAAGATTGAACCTTAAG630.10122595883477674No Hit
CAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC630.10122595883477674No Hit
TATGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10122595883477674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)