FastQCFastQC Report
Sat 31 Dec 2022
SRR5843650.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843650.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56723
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACGTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG1030.18158418983481128No Hit
CATGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA830.14632512384746926No Hit
GCGCTAGGGGGAGAAAGCTGGAAGTGAAAGGTAGAATTTTTGAACT810.1427992172487351No Hit
CTGGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA790.1392733106500009No Hit
CCAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.13751035735063377No Hit
CGACATGGGGGAGACGAATTGCCAGAATTATTAACTGCGCAGTTAG780.13751035735063377No Hit
TATCTTGGGGTGCGCATGCGCCATGACAAGATCGTGATTGTGCTGA780.13751035735063377No Hit
GTCGATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.13574740405126667No Hit
GTCTCGGGGGGCGGAGCCTGGGGTGGTGCGTGTGCACAAGTAGGTC770.13574740405126667No Hit
TATTCCGGGACGGAGGCTGGTAGGAATTGCCAGAAGCGGGGCCAGA760.13398445075189958No Hit
TTACAAGGGGGAGGACAGCTACGGGCAGCAGTGGACCTACGAGCAG760.13398445075189958No Hit
ATTGTGGGGTCATCTGCAAGACCAGAAGGAATTCTGTCTTCCAGCA750.13222149745253248No Hit
TCCAGCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC750.13222149745253248No Hit
CACCATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC750.13222149745253248No Hit
TCTGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA740.13045854415316538No Hit
CTTAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA740.13045854415316538No Hit
AGTTTTGGGATCTTTAATTCTTTTGGCACTGAAAATCTTTACTCCA740.13045854415316538No Hit
TCCTTGGGGCGATCTTCGCGCGGGATGCAATGATTGCTATAGTTCT740.13045854415316538No Hit
TACACAGGGGGGCAACGGCGAGAAGGAGGAGAGGACCATTATGAAG730.12869559085379828No Hit
GACTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.12869559085379828No Hit
TATTTGGGGCAGAACAACCGCCGCATACGGCCGATTGTCGCAGCCC720.12693263755443118No Hit
TTCAGCAGGGGCTAACAGATATCCCTGTACTTCTTAAGCCAAGATA720.12693263755443118No Hit
CGTGACGGGCACCTGAAACGGGCATCGTCGCTCTTCGTTGTTCGTC720.12693263755443118No Hit
TCCTCTGGGGGAAGGCACATTGCTGAAGCCCAACATGGTCACCCCT710.12516968425506408No Hit
GACGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC710.12516968425506408No Hit
CCCAGTGGCATGCAGACTGTCCTGTTAGTGAGTCAGAGCAAGGCTC710.12516968425506408No Hit
TCGTGCGGGGGGAACGTTTCAGAGTTGCTAGAGCATCAGCCTGTGA700.12340673095569699No Hit
AAACTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT690.12164377765632989No Hit
TGATATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.12164377765632989No Hit
ACTGCTGGGGCAGTTCGTGTTATCCAACTACTACTACTCCTACTCC690.12164377765632989No Hit
CGTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.12164377765632989No Hit
CATTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.12164377765632989No Hit
AGCTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.11988082435696278No Hit
TTTTTAGGGCTCTCATCTTGCTGTTTAGAGATGGACTTGGCTCATC680.11988082435696278No Hit
CACGGTGGGGGGCAGTTGGACTTACAAGACAATGGTTGCTACTGGC680.11988082435696278No Hit
GATGATGGGGGCTGTGGGAAGTAGGAGGAGGACTGGTTTTCAGCCG680.11988082435696278No Hit
TTAACTGGGGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC680.11988082435696278No Hit
ATGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT670.11811787105759568No Hit
CACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT670.11811787105759568No Hit
AGTACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.11811787105759568No Hit
TCTCGGGGTTTGTGGAGGAGCTTTCCTGGGTAGGTTCAGCTTCTTT670.11811787105759568No Hit
ATTAGTGGGGACCATAGCCTGTCACCACCCAACATCACCACGGGCT660.1163549177582286No Hit
GCTATTGGGCAAGAAGACATGCGAGGAGCACCAGCTCTGTGTCGTG660.1163549177582286No Hit
TTTTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.1163549177582286No Hit
TTTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.1163549177582286No Hit
TAGAATGGGCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAG660.1163549177582286No Hit
TGAATTGGGGAATATTGTGACCAAAACGCAACGATTGTTATAGTTC660.1163549177582286No Hit
ACGACTGGGAGTCCGGAGGCTGCACTATGAGGGTCTGATCTTCAGG660.1163549177582286No Hit
GCTACTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT660.1163549177582286No Hit
ATTGCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC650.1145919644588615No Hit
CTACTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.1145919644588615No Hit
CTATGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC650.1145919644588615No Hit
TCGTTTGGGAATGTCTCTCGCTCTCCACTGCTGCAAGGAAGGAGCA650.1145919644588615No Hit
GGATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.1145919644588615No Hit
GCAGACGGGCGGATGAGAGACTGGCTCAAAAACATCCTCATGCAGC650.1145919644588615No Hit
TAACATGGGAGTTGAGGGCGTTCGGAGAAGTCCAGTCCTTACCTAC650.1145919644588615No Hit
TGTAACGGGGGCGGCGGAGCGGAGCGGACGGCGAGGTATCAGCCGA650.1145919644588615No Hit
CCATAAGGGGAGGTCGGTAGGGAAAGACGACTAAAAGACAGGTCTC650.1145919644588615No Hit
TATTCAGGGGCGGAGCGGCAGCACAGTCCCTCTACATCGCCAACCA650.1145919644588615No Hit
TACACTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA640.1128290111594944No Hit
CACGCAGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC640.1128290111594944No Hit
GATAATGGGGGGTGTCACTGAAGTGGTCCATCAGGAGGCTGGTTCT640.1128290111594944No Hit
GGAGCCGGACTGTTGTTGAGACAGAGCCTGTTGGCTCCTCCGGCTG640.1128290111594944No Hit
TAATGAGGGAGACGCCAGCAGCGTGGCCCGGGAGGGCGGGGCGCTG640.1128290111594944No Hit
CGCATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.1128290111594944No Hit
TGTTAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC630.11106605786012728No Hit
AATTAAGGGTCTGTAACTCAGCGATCATGAGAGTTTCTGTGTGATG630.11106605786012728No Hit
TTGCCTGGGTGATGAGATGAATGTGAAGGTGCTGGACTTTGAGCAC630.11106605786012728No Hit
TCTCTCGGGGTCTGTGGACACCAACTAGGATGGGGACCACACCTAA630.11106605786012728No Hit
TTACAAGGGGGATGGATGCTATTCCTGGGACTGGGAACAAGGTTAC630.11106605786012728No Hit
TACAGTGGGATCCACACCTACCTCTAGGAGAGGTTGGGGTTGTCTT630.11106605786012728No Hit
GGCCTGGGCGGCGACCCCAAAACAAGGCCCGCGAATGTTGGGAGCC630.11106605786012728No Hit
TCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT620.10930310456076019No Hit
TATCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10930310456076019No Hit
GAACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10930310456076019No Hit
TGTTGCAGGGGGTACTTCCTTTTCCGAGTAACCGCCAAGATGGCCG620.10930310456076019No Hit
CTTGTTGGGAGGCAGGAAGAAGGCAGGGGAAGATACCACCATGCTG620.10930310456076019No Hit
AGCTCTGGGGCCCTTTTCCCTTTCTGCCACCGCCATGCCATCCAGA620.10930310456076019No Hit
TGTTCAGGGCGATCTACTCACGGGGGAAATTGAGAAATTGCCTGTA620.10930310456076019No Hit
CAATTTGGGGGAGCGCGGCCGCGCCGGCGCGTCGAGCCAGAAGCAG620.10930310456076019No Hit
TGACCTGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCC620.10930310456076019No Hit
CAACATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10930310456076019No Hit
TTGCAAGGGGGAGACTCTCTTCGTGCACCGATTCTCTCACGGAACC620.10930310456076019No Hit
TACCTAGGGGTTCCAGTTCACTGACTGGCCAGAACAAGGAGTGCCA610.10754015126139309No Hit
AAGCTGGGGAACGTGATTATTTGTGGAACCAATACTATAAAAAGCA610.10754015126139309No Hit
GTTCCTGGGTGGAGACGAATTGCCAGAATTATTAACTGCGCAGTTA610.10754015126139309No Hit
CTGTCCGGGAAGCCTGAGCTGGCTGAGCCAAATGCCCAGCACTGCC610.10754015126139309No Hit
AACGTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10754015126139309No Hit
TGCTGGGCATCCCTGCTGGAGCAGCTGAACGACCAGTTCAACTGGG610.10754015126139309No Hit
CTATATGGGGGCGCCCTTGGCGTGATGGAGCAGCAGCAGCAGCAAC610.10754015126139309No Hit
GCTTACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC610.10754015126139309No Hit
GCTGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10754015126139309No Hit
GCAATTGGGAGAGCCCTTATGTCACTTCTGTTATTCTTCACATTAA610.10754015126139309No Hit
GCACATGGGGGGAGAGCACCAAACTCAGGGACCTGGCTGCTGAGCT600.10577719796202598No Hit
CTTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10577719796202598No Hit
GCATATAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10577719796202598No Hit
CTTCGCAGGGGGGGGATAAACAAAGGATGATTGCAGTACACATTTA600.10577719796202598No Hit
TCTCACGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT600.10577719796202598No Hit
TTAGTCGGGGGGGTTCGTGGTCCAGAGGACAGCAAGGAGCCCACCC600.10577719796202598No Hit
TGCTTAGGGAATACCCTCAGGGATCCCTTGGTCTTAGGGGTAGGCA590.10401424466265888No Hit
CTCGTCGGGGTAGGATTAGATGTAGACACACGAGCTTACTTTACAT590.10401424466265888No Hit
ATGTTCGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA590.10401424466265888No Hit
AGTCTAAGGATCTAGTAATCCAGCATTAGCATGTGTGATAGTTACA590.10401424466265888No Hit
TGTCAAGGGCCGATCTGTTCAGGGGGCGGAGCATCCCGGGCGGCGC590.10401424466265888No Hit
CGATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.10401424466265888No Hit
CAACCCGGGGGAGGATGCCTTGGGTTCCCTGGGGCTGGTTTCATTC590.10401424466265888No Hit
GTCTCAGGGGGGAATTCGATATGCGTTACGTGAGTCTGATAGCAGT590.10401424466265888No Hit
CTTGAGGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT590.10401424466265888No Hit
GTACCAGAACCTGTGCCGGGAGGCAGAGGGCAAGCCTCTGTGCAGC590.10401424466265888No Hit
CTTTCTGGGTCTTTCCGGTGGAGGAGTCTGGAGACGACGATCAGAA590.10401424466265888No Hit
CTAAGGGGTACGGAATAATTCGCATCTCCATTATTCTAGACCCACT580.1022512913632918No Hit
AGTTTTGGGCAGGGGCTGAAGGCAGGACTGGGGAAGCGGCTAGCCA580.1022512913632918No Hit
TCTTGTGGGAGAGTGAGTGTGCTTCAGCAGCCCGAGAGAGTTGCAA580.1022512913632918No Hit
TATCTTGGGGGCCTTGGCAGGGAATGAGGTAGACAGGGGAGTCTTT580.1022512913632918No Hit
ATAAATGGGAACTGTGACCGTGGGTTTTTTGAATCTCTTGTCATTC580.1022512913632918No Hit
GAATCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.1022512913632918No Hit
ATAAAGGGGGGGCGAGATGGCTTCAAGGTTACTTCGCGGAGTGGGC580.1022512913632918No Hit
ACTTGTGGGTAGATGATTCGCCAAAGGAAATAGCAAAATTTATCTT580.1022512913632918No Hit
TTCGTAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.1022512913632918No Hit
GCAACTGGGAGAGGAAAAGTGAGCTGTGCTGTGGCTCCCGCGGCTG570.1004883380639247No Hit
TACATTGGGGGACCCCGGGAGAATCCGCGTTGAAGAACAGAGCATT570.1004883380639247No Hit
TACAGCGGGGCTCATATCCATCTGTAAATCCAGTTCCAAGGGATCT570.1004883380639247No Hit
TATTGTGGGGGGGCCCGGCAGAGTGAGTATGGCTGCGGGGTCGCGG570.1004883380639247No Hit
GCTCATGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC570.1004883380639247No Hit
GTCTTCGGGGCTGGAGGAACAGCTGGGTCCAGTGGCGGAGGAGACA570.1004883380639247No Hit
TAAACAGGGGATGGTGATCATCCTCGCTATTGGAGCTGGCATTATC570.1004883380639247No Hit
GATTATGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAGG570.1004883380639247No Hit
TGCCTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA570.1004883380639247No Hit
CCAACCGGGGAGGTACTAGCTTTGATGAGATCTGGTTTTCTGGAAA570.1004883380639247No Hit
GGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT570.1004883380639247No Hit
AAGGCTGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC570.1004883380639247No Hit
GCTGAGGGGGAGGCAGATGCGAATGAGGAAGGCGTGCGGCGAGCGT570.1004883380639247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)