FastQCFastQC Report
Sat 31 Dec 2022
SRR5843649.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843649.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54670
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACGTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG940.171940735321017No Hit
ATTTCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA850.155478324492409No Hit
AGTTTTGGGATCTTTAATTCTTTTGGCACTGAAAATCTTTACTCCA810.1481616974574721No Hit
GACGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC790.14450338394000364No Hit
AGTACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.13901591366380098No Hit
TTGCTGGGGGCTTTCCGGTGGAGGAGTCTGGAGACGACGATCAGAA750.13718675690506676No Hit
AGCTTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA740.13535760014633252No Hit
GTCTCAGGGGGGAATTCGATATGCGTTACGTGAGTCTGATAGCAGT740.13535760014633252No Hit
GACTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.13352844338759834No Hit
GCATATAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.12987012987012986No Hit
CAATCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.12987012987012986No Hit
TATTCCGGGACGGAGGCTGGTAGGAATTGCCAGAAGCGGGGCCAGA700.12804097311139565No Hit
TTAACTGGGGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC700.12804097311139565No Hit
ATTGTGGGGTCATCTGCAAGACCAGAAGGAATTCTGTCTTCCAGCA690.1262118163526614No Hit
CGATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.1262118163526614No Hit
TTTTTAGGGCTCTCATCTTGCTGTTTAGAGATGGACTTGGCTCATC680.1243826595939272No Hit
TATTCAGGGGCGGAGCGGCAGCACAGTCCCTCTACATCGCCAACCA680.1243826595939272No Hit
ATAAAGGGGGGGCGAGATGGCTTCAAGGTTACTTCGCGGAGTGGGC670.12255350283519298No Hit
TGCATGGGGGGGAAAACTCAACTGTTTTTTCCTTCAAGATTTTCTG670.12255350283519298No Hit
GGACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT670.12255350283519298No Hit
TCTGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.12072434607645875No Hit
AAGCGAGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT660.12072434607645875No Hit
ATTGCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC660.12072434607645875No Hit
GAATCAGGGGGGACGCCCCCTGCTCGCGTTACTGCCAAGCGAGCGT660.12072434607645875No Hit
TCTCTCGGGGTCTGTGGACACCAACTAGGATGGGGACCACACCTAA660.12072434607645875No Hit
AGTCTAAGGATCTAGTAATCCAGCATTAGCATGTGTGATAGTTACA660.12072434607645875No Hit
CAACCCGGGGGAGGATGCCTTGGGTTCCCTGGGGCTGGTTTCATTC660.12072434607645875No Hit
TTTGCTGGGGGGGTGCCCATCCCAAAGACAGAGAGGAGAATTGCAA650.11889518931772453No Hit
CTTGAGGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT650.11889518931772453No Hit
TACGGTGGGGGCTCAGACCCTGGAGGCTAAGGACTTGTTTCGGAAG640.11706603255899031No Hit
TAATGAGGGAGACGCCAGCAGCGTGGCCCGGGAGGGCGGGGCGCTG640.11706603255899031No Hit
GCGCTAGGGGGAGAAAGCTGGAAGTGAAAGGTAGAATTTTTGAACT640.11706603255899031No Hit
TACCTAGGGGTTCCAGTTCACTGACTGGCCAGAACAAGGAGTGCCA630.11523687580025609No Hit
GCTTCAGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCC630.11523687580025609No Hit
TCTTGTGGGAGAGTGAGTGTGCTTCAGCAGCCCGAGAGAGTTGCAA630.11523687580025609No Hit
ATGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT630.11523687580025609No Hit
AAGCTGGGGAACGTGATTATTTGTGGAACCAATACTATAAAAAGCA630.11523687580025609No Hit
CACAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACT630.11523687580025609No Hit
CGTCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.11523687580025609No Hit
CGACATGGGGGAGACGAATTGCCAGAATTATTAACTGCGCAGTTAG630.11523687580025609No Hit
GCTACTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT630.11523687580025609No Hit
TTCAGCAGGGGCTAACAGATATCCCTGTACTTCTTAAGCCAAGATA630.11523687580025609No Hit
CTTATGGGAGGATAGACAATTCTTGGAAATGTCCCTCTACGGTGCC630.11523687580025609No Hit
TCCAGCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATAC620.11340771904152186No Hit
GATGATGGGGGCTGTGGGAAGTAGGAGGAGGACTGGTTTTCAGCCG620.11340771904152186No Hit
CTATGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC620.11340771904152186No Hit
TATATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.11340771904152186No Hit
TGTTCAGGGCGATCTACTCACGGGGGAAATTGAGAAATTGCCTGTA620.11340771904152186No Hit
AACGTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.11340771904152186No Hit
ATTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT620.11340771904152186No Hit
TAGCCGGGAACAATGAAGATGGTGCCAAAGATGCTTTCTCCTCTGG610.11157856228278763No Hit
CCAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.11157856228278763No Hit
CTTCCTGGGGTGCTGATTTAAAGTATGCTGTCCCAAAATATCGCTG610.11157856228278763No Hit
CTACTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.11157856228278763No Hit
CACCATGGGATGCCACAACTAGATACATCAACATGATTTATCACAA610.11157856228278763No Hit
TGTAACGGGGAGACAACATGGCGGCGTCCGTGCTAGGCTCGCTGCT610.11157856228278763No Hit
CTTTACGGGGTTCTAACTCAATTGTGACTATATTTATAGTAAGGAC610.11157856228278763No Hit
GTCTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA610.11157856228278763No Hit
GCTCATGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC610.11157856228278763No Hit
TACCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.11157856228278763No Hit
TTGAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.11157856228278763No Hit
CCATAAGGGGAGGTCGGTAGGGAAAGACGACTAAAAGACAGGTCTC610.11157856228278763No Hit
CTGGCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA610.11157856228278763No Hit
TATCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.1097494055240534No Hit
ATTAGTGGGGACCATAGCCTGTCACCACCCAACATCACCACGGGCT600.1097494055240534No Hit
GCTCATGGGAGTTACTTTTCTTGTTTCTATTAAAAAAAAATTAGTG600.1097494055240534No Hit
CTGTATGGGGCGGAGGAGGACGGTAGCTCGGTCACGGCGTTTGAAG600.1097494055240534No Hit
TACCAAGGGAGATGTCACTGGGAGCGGTGGAGGCTGTGAGAGGTAA600.1097494055240534No Hit
TATTTGGGGCAGAACAACCGCCGCATACGGCCGATTGTCGCAGCCC600.1097494055240534No Hit
CTAACTGGGAGGGCTCTGCAAATTCGGCTTTTATGAAGTCTTCAAA600.1097494055240534No Hit
TCTCGGGGTTTGTGGAGGAGCTTTCCTGGGTAGGTTCAGCTTCTTT600.1097494055240534No Hit
TGTAACGGGGGCGGCGGAGCGGAGCGGACGGCGAGGTATCAGCCGA600.1097494055240534No Hit
TCCTTGGGGCGATCTTCGCGCGGGATGCAATGATTGCTATAGTTCT600.1097494055240534No Hit
TTACAAGGGGGAGGACAGCTACGGGCAGCAGTGGACCTACGAGCAG600.1097494055240534No Hit
GCTGAGGGGGAGGCAGATGCGAATGAGGAAGGCGTGCGGCGAGCGT600.1097494055240534No Hit
TTGCAAGGGGGAGACTCTCTTCGTGCACCGATTCTCTCACGGAACC600.1097494055240534No Hit
AAACCCGGGGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCCTTT590.1079202487653192No Hit
TCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT590.1079202487653192No Hit
CTCGTCGGGGTAGGATTAGATGTAGACACACGAGCTTACTTTACAT590.1079202487653192No Hit
TTTTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.1079202487653192No Hit
TGTCAAGGGCCGATCTGTTCAGGGGGCGGAGCATCCCGGGCGGCGC590.1079202487653192No Hit
ACTAAGGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG590.1079202487653192No Hit
GCAATTGGGAGAGCCCTTATGTCACTTCTGTTATTCTTCACATTAA590.1079202487653192No Hit
GTGTGTGGGGGGGCGAGATGGCTTCAAGGTTACTTCGCGGAGTGGG590.1079202487653192No Hit
TACACTGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA580.10609109200658497No Hit
CACTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGA580.10609109200658497No Hit
CATGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10609109200658497No Hit
GAACTAGGGTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATCCC580.10609109200658497No Hit
CACCATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC580.10609109200658497No Hit
GCAGACGGGCGGATGAGAGACTGGCTCAAAAACATCCTCATGCAGC580.10609109200658497No Hit
AGTAGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10609109200658497No Hit
GTTGCTTTTTTTCCCAGCCCTCCTCACTTCCTGGGTTGACCCTCAT580.10609109200658497No Hit
CTTAGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.10609109200658497No Hit
GGATTAGGGACAGTTTTGCATTTTGGTCAGTGTTGGGAGACCCCGG580.10609109200658497No Hit
GGGCAAGGGGATCTCATCTTGGGAAGTGAGAAGGCAGTAAGCAAAA570.10426193524785074No Hit
TGCTTAGGGAATACCCTCAGGGATCCCTTGGTCTTAGGGGTAGGCA570.10426193524785074No Hit
TATCTTGGGGGCCTTGGCAGGGAATGAGGTAGACAGGGGAGTCTTT570.10426193524785074No Hit
ATCACTGAGATCTCATCTACACAAGATGCCATGATGGAGGAGATAT570.10426193524785074No Hit
CTTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10426193524785074No Hit
CAGCTAGGGGAGGTCAGCGAGCGGCCGTCCCAATGTGGGGATGCGG570.10426193524785074No Hit
GAATCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10426193524785074No Hit
TCGTTTGGGAATGTCTCTCGCTCTCCACTGCTGCAAGGAAGGAGCA570.10426193524785074No Hit
TACCAAGGGAGATCCGCCTGGTGGCCCAGTGAAGACCCACTCAAAA570.10426193524785074No Hit
TCAGAAGGGCTGGGTACATAGTAATGAAAAACGGGTCTCCACTAAC570.10426193524785074No Hit
ACTTTAGGGGGCAGAGATGAACGGGCTTGCAGCCCAGGGCAGATAT570.10426193524785074No Hit
GCTGGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10426193524785074No Hit
ATTAGGGGTATTTTCAAAGATGGCCCACTGGAGTAACAAGTAGGCC570.10426193524785074No Hit
AACAGAGGGGTCGTGCTGCAGTTCACCACCGGGAGGTGGACCCTGG560.10243277848911651No Hit
AAGAGTGGGCCAACTGTAGCAGCAAGAACCTCGACCATGGGGTTCT560.10243277848911651No Hit
CACGGTGGGGGGCAGTTGGACTTACAAGACAATGGTTGCTACTGGC560.10243277848911651No Hit
CGGCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10243277848911651No Hit
ATATCCGGGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAGGAGGGC560.10243277848911651No Hit
AATGTAGGGGGGGAACTATATGGGTAGACGTTTCCTGCGTGGTATC560.10243277848911651No Hit
ATCGAAGGGATGGCGATGTAGCTGTGAAAGTGCTCAAGGTGGCCCA560.10243277848911651No Hit
ATAATGGGGGATGTCAACGACAACAATCTGGCCTATCTCGAGGCCA560.10243277848911651No Hit
ACAGCAGGGGTGTGGAGTGAGGGGATATGGTGACTGTGCCCTTCAA560.10243277848911651No Hit
CGTGATGGGGTTCAGAACTCTGTCTGTGATGCTGGCGTTGGTGCCC560.10243277848911651No Hit
TAGAATGGGCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAG560.10243277848911651No Hit
TGCTGGGCATCCCTGCTGGAGCAGCTGAACGACCAGTTCAACTGGG560.10243277848911651No Hit
TCCTCAGGGATGGCTCCCAGCCAACCCTACTGAGAAGATTGTGCGT560.10243277848911651No Hit
GAACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.1006036217303823No Hit
TCCTCTGGGGGAAGGCACATTGCTGAAGCCCAACATGGTCACCCCT550.1006036217303823No Hit
CACGCAGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTATC550.1006036217303823No Hit
GTCTCGGGGGGCGGAGCCTGGGGTGGTGCGTGTGCACAAGTAGGTC550.1006036217303823No Hit
TACAAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA550.1006036217303823No Hit
GGATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.1006036217303823No Hit
TAACAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.1006036217303823No Hit
GACAGCGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC550.1006036217303823No Hit
ACGACTGGGAGTCCGGAGGCTGCACTATGAGGGTCTGATCTTCAGG550.1006036217303823No Hit
CAACATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.1006036217303823No Hit
TCCCCCGGGCATATCTTTGGATGTAATCACTTGCCAGAGCAGCCAA550.1006036217303823No Hit
GCATAAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC550.1006036217303823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)