FastQCFastQC Report
Sat 31 Dec 2022
SRR5843648.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843648.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52195
Sequences flagged as poor quality0
Sequence length46
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA890.17051441708975956No Hit
CCTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA770.1475237091675448No Hit
GTACGCGGGATGATTAGAGCTTCTAATGACCACACAGAAGGCAAAC740.14177603218699109No Hit
TTATCAGGGGTTTTTCCTTTAGCCTTTCTCAGCACAAGCCCTCTGT730.13986013986013987No Hit
ACTCATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC710.13602835520643738No Hit
CTTGCCTCGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTA680.1302806782258837No Hit
CCTCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.1302806782258837No Hit
CGTCGCGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT670.12836478589903247No Hit
TAATATGGGGTTAAAAAACCAGTTTTTGCCTAATAAACTCACATTT670.12836478589903247No Hit
TCCGTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.12644889357218123No Hit
GCTAATGGGGCCTTTTGTGACTGGCGGTGAACGAGTGCGCAGTGCC660.12644889357218123No Hit
TACTTTGGGAATGATGAGTCTGCAGAGTGCTTCGCTGAGATGCTGA660.12644889357218123No Hit
TAGCCAGGGGACTTGATTTTTTTCCCCTCAGTGAGTGGATTTCGGA650.12453300124533001No Hit
CCATACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.12453300124533001No Hit
TCAATTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA640.1226171089184788No Hit
CTAGGAAGGGACAAAAAAGCTATGAAAAATATTCTGTTCATACAAA630.12070121659162754No Hit
TCAGCCGGGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAA630.12070121659162754No Hit
AATAACGGGATCCAAGACACAGGTTCAAGGCCCCAACCCCTGACAC630.12070121659162754No Hit
ATGCGGGGTTGGTGGTGGTAGGTGTTTTTGATTTTTGTTTTTTCTG610.1168694319379251No Hit
GCGGATGAGAGACTGGCTCAAAAACATCCTCATGCAGTTTTATGAA610.1168694319379251No Hit
GTCGGAGGGAAGCCTCAACATGACAGTGAAGGGCCAGAATGAAGAC610.1168694319379251No Hit
CACTACGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC610.1168694319379251No Hit
GGAACGGAGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.1168694319379251No Hit
TACACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.1168694319379251No Hit
CGCCGAGGGACATTGAACTCTTCTTGAATTCTACTCCTGGAGGTGG600.11495353961107385No Hit
TGCACAGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCC600.11495353961107385No Hit
TATCACGGGATTATAGAAGAGCTAATAAATTTCCATGATCACACAC600.11495353961107385No Hit
GCTGCTCTTTCCCCCCACCCCATACTTCCCCTTCTGCAGGTCGGCA600.11495353961107385No Hit
CAGCCTGGGAAGAGGAAGGTGTAGGCAGCGTCTTTGTCCCACAGCT600.11495353961107385No Hit
AGGCCTGGGGATCTCGCTCAGGGGAGTAAGGAAGATATTGAGCGCA600.11495353961107385No Hit
GAAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA590.11303764728422264No Hit
ATAAAAGGGGGACCAAACACCTTGTGATAACAAGCCTGCTCTCACA590.11303764728422264No Hit
TATGCTGGGACATTAATTAGGGCTGAAAGCCCTAACTTAATGGACG580.11112175495737138No Hit
CTGACAGGGGCGTGGTGAATAAGGAAGCCGGGAGCGGCCCTGCCTC580.11112175495737138No Hit
GGCTATGGGGATACACAGCCCTGCAGTCCTGTGCGGCACGTCCAGC580.11112175495737138No Hit
TCTAATGGGCACCAGAAGGGCTCGTTAGGGATGTAAGAACACAACA580.11112175495737138No Hit
CAGCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.11112175495737138No Hit
ATTACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA570.10920586263052016No Hit
TCGCTTGGGGAGAGGGATGTATGTGCAGAGGTCAGAGGACAGCCTT570.10920586263052016No Hit
CTTAACGGGGGGAATTCATCTCCTCTAACTTTGGAGAGGTAGGAAT570.10920586263052016No Hit
TTTACCGGGGGGAATTCCTGGAGATTGTCTCGTACGGTTAAGAGCC560.10728997030366894No Hit
GCTCACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10728997030366894No Hit
CAAGAAGGGACCCAGCTTCCTGGCCATGATTCATGTCAGACGCTGC560.10728997030366894No Hit
ATGTTCGGGGTGGGAAAACAAGCATATCACATGGTTTGCAACCCTT560.10728997030366894No Hit
ACTATTGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG560.10728997030366894No Hit
TACCAAGGGATTTAAGCTAAATTGCCTTTAAAATTCCTTCAAGCTT560.10728997030366894No Hit
GAGCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10728997030366894No Hit
CTTCGCGGGGTGGCAGAGCTGGGAGTCCGGCCTGGAGGGGGTCCTG560.10728997030366894No Hit
TAACCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.10728997030366894No Hit
GATTTGGGGGAGGATGATTCTTTGAGCATAGTTCTTTTTGAAAACA550.10537407797681769No Hit
TAGCAAGGGGAGAAGAGGATGGAGAAGAAGACGGAGCAGCAGCGGC550.10537407797681769No Hit
CTTAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.10537407797681769No Hit
CTGCACGGGGAACTTCAATGAGGAGGGGGATGCTGAAGAAGCGATG550.10537407797681769No Hit
CACTCAGGGGTGCACGCTGAGACTGTGCTTTTTGTTTCTTAGCGGG550.10537407797681769No Hit
AAGTGTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC550.10537407797681769No Hit
ATATTAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT550.10537407797681769No Hit
TTATGTGGGGACAAAGCCACCTTGACCCGATTCTTCGCTTTCCACT550.10537407797681769No Hit
CGACTTGGGGTGACTTTGAGTGGCTTCGAAGTGAACTAGAAAGAGA550.10537407797681769No Hit
GACAAAGGGATTTTAGGTTATTTTTGAGAGGATTGCACAAGCCCCT550.10537407797681769No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA550.10537407797681769No Hit
CGATAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG540.10345818564996648No Hit
AAGCAGGGGAACCAAAACTGTGAGGAGCTCACCCATGGTGCTGGGT540.10345818564996648No Hit
TTCTATGGGGCCCTTTTCCGGTCGCGGCGCTGCGCGGTGTGGAGCT540.10345818564996648No Hit
AATTATGGGATCCCAATTGGAACTTGCCCTCCATACTCTCCTCCCA540.10345818564996648No Hit
TCATTAGGGGTACATATAAAGTTCCAGGCCAGAGCAGCCGATAGTT540.10345818564996648No Hit
TCTGTGGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTC540.10345818564996648No Hit
CCTTAAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC540.10345818564996648No Hit
TTGCAAGGGGTTCTGATTTTCAAATGAGCTAGATGCTCCTCTTTCC540.10345818564996648No Hit
AAACCCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC540.10345818564996648No Hit
TAGTACGGGATTGTTCTCAAATACCTTAATACTTAGGAAAGAATCT540.10345818564996648No Hit
AACAAAGGGACGAACAAGAAGACCCAAGTTTGAACCACCATTTAAA530.10154229332311525No Hit
GCTTCAGGGGCCCGCAGACGTGGCATGAGAATGGCTTCTCGTTGGT530.10154229332311525No Hit
GCCAAAGGGGGGCCAAGACGGGTGGAGACTTGTGCCAAATCGTAGG530.10154229332311525No Hit
AAAAAGGGAAGATACACACTAATACGGTGCTTAACAATGGCCTGAA530.10154229332311525No Hit
TTTACCCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA530.10154229332311525No Hit
CTCGGTGGGGAAAAAAAGAACCTTTCGGCTATATAGGAATAGTATG530.10154229332311525No Hit
AAAAAAGGGGTGGCCATGAGCCACCTCCACATAAGGGACAGTGACC530.10154229332311525No Hit
TACTGCGGGAAGGCCCTGAGTCCTCAGCTCCACAAAACAAAAAAGA530.10154229332311525No Hit
TACTACGGGGCCAAGCAAGACCAGGTGGTACTGATAGATACAACAG530.10154229332311525No Hit
TGAACTGAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA530.10154229332311525No Hit
CACAAGGGGATAGGCATGGAGTTTGGAGGACAGCTTTCTGGAGTTG530.10154229332311525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)