FastQCFastQC Report
Sat 31 Dec 2022
SRR5843646.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843646.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62887
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAATTGGGAGGCGTGATGACATAAATGTGGGGGAACCAGAGGACA890.1415236853403724No Hit
CGCAACGGGTAGTATAACAAGCACTGGTATTTTTGTACAAAAAAGA870.1383433778046337No Hit
TTGACTGGGTCTGACAAATTAACTCATGCTTGAGGAAACCTTGTTT830.1319827627331563No Hit
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG830.1319827627331563No Hit
CGGAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA810.1288024551974176No Hit
AGCTATGGGGAGGGAATTACATGAAGTCAGATAGCTCCAGGTATTC800.12721230142954823No Hit
GCTTAAGGGGGCGGGAGAAGCAGCACTCTAGCCGCCTGCAACCCCA800.12721230142954823No Hit
TTATGCGGGGTTTGGGAAGCGCTCTGCCCGGCGGACAGGATGGCGG790.1256221476616789No Hit
AGGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA790.1256221476616789No Hit
ACATATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC780.12403199389380953No Hit
ACTATTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA770.12244184012594017No Hit
GAATATGGGGTCTTGTTTTCCTGTCTCTCATTCTCCCACTCTGGCT770.12244184012594017No Hit
TTCTCTGGGACACAAAGCCTTGGACAGAGTTCCACAACAAGCCGAG760.12085168635807082No Hit
TCTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.12085168635807082No Hit
TACCTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC750.11926153259020147No Hit
ATTCAAGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATG750.11926153259020147No Hit
GCCAGTGGGACCTAGTTTAATTTCCATCGTACATAAAGATAGTTGT740.11767137882233213No Hit
TCTACTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA740.11767137882233213No Hit
CCCTGAGGGGGAATTCCTCCTCATGTGAGCGGATCACTATCTACAG740.11767137882233213No Hit
CTTGCAGGGATCTGGCATTGGGGAGAGTGAACCGCGGAGAAGGTGA730.11608122505446276No Hit
GTATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.11608122505446276No Hit
AGTAGGGGGATCTCTGAGAAAGACAGTGGAGTTCATAAACCAAAAG730.11608122505446276No Hit
GCTTATGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT720.11449107128659342No Hit
AAATAGGGGGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGCT720.11449107128659342No Hit
AGCTCTGGGACTCTGCAAGCATTTTAGGGTGCAGAGACTTGACTCC720.11449107128659342No Hit
TGACTAGGGGAAGCAGAAGAGGACCAGTCTGAGGCCTCGGGGAAGA720.11449107128659342No Hit
GTCGACGGGGGGGTACAGGCCGTAGGTGGTGGAGAGTAAAATAGTT720.11449107128659342No Hit
CGTTAAGGGTCGTGTTAGATATTGAGGCTGCTTCGTGTCGGCACGA710.11290091751872407No Hit
TGTTCTCCTGGTGGATGGTTCCAAGAGCGTGCGCCCACAGAACTTC710.11290091751872407No Hit
CGGTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA700.11131076375085472No Hit
TAGCAAGGGATTTTCAGTATGAATAAGCTCTATTTCAAAAAGTTGC700.11131076375085472No Hit
CACCTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA700.11131076375085472No Hit
CACCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA700.11131076375085472No Hit
GAGCTTGGGAGAGACCATGGAAAAATACAAACGTGCTTTGGCAGAT700.11131076375085472No Hit
TTATCAGGGATGAGCATCTTCACCATGAGGGCCAAGCCCAGGTTGC700.11131076375085472No Hit
CTGCCGGGACGTGGGTGGGGGAGCTGAGCGCTCAGACCCAGGGCTA690.10972060998298534No Hit
CAAAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA690.10972060998298534No Hit
CTATCAAGAAGAAAACCAGTTGTTCCCACTAAGAGAAAAGTGTGAC690.10972060998298534No Hit
GCACCAGTGCAATTGCCCAGGATGCAGACCAGAACTACGACTATGC690.10972060998298534No Hit
TTAAGCGGGGGACACAAGCAACGCACGTGGCGAGGAGAGGCAACTC690.10972060998298534No Hit
CCATAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG680.108130456215116No Hit
TGACAGGGGATCAGAGACTGGTGGTGGAGCTGCTTATCAAAAACGA680.108130456215116No Hit
GGTCCTGGGGTGCTGAATTTAGTATAAAGGATTCTTTGTATTGTTC680.108130456215116No Hit
AAGCCGGGGAAGCAAAACCCGAGACCATTAATGATTCATCCGCACC680.108130456215116No Hit
TACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC680.108130456215116No Hit
ATTTATGGGGCCTTGAGTTCGCCCAGACGCTTTAGGGTCGGCCGAG680.108130456215116No Hit
TTCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.108130456215116No Hit
AGCTCCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC670.10654030244724665No Hit
TGTAAGGGGTAGCCGAGCTGCGCCAAGCGAACGAGCACATGCGCCA660.1049501486793773No Hit
CACAGCGGGTCTTCCGGTCCTCTAGTGCTAAGCACCGTGCCTGGTG660.1049501486793773No Hit
TTTACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.1049501486793773No Hit
GTTTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT660.1049501486793773No Hit
GTCAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA660.1049501486793773No Hit
CGCTGGGGGTCATGCAGGTCCGGCCGACCTCTCTCTCTCGTCCCCC660.1049501486793773No Hit
CATCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10335999491150794No Hit
CGTCTTGGGGGAGTGACAGCAGCGCTTCAGTCAGCCACCATCTGAA650.10335999491150794No Hit
TCACGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10335999491150794No Hit
CCACCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA650.10335999491150794No Hit
TACTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC650.10335999491150794No Hit
CCACCAAGCAGACACAGACTTTCACCACCTACTCTGACAACCAGCC650.10335999491150794No Hit
CTACTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA650.10335999491150794No Hit
ATCTTTGGGGTCCATTTTGTAGCAACGGACTAGAGTTCCCAGACGC640.10176984114363859No Hit
GCTCCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10176984114363859No Hit
TTCAGGGGATGTGGTGACACCCAAGCATAACATTTTGTTACTACTT640.10176984114363859No Hit
GTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC640.10176984114363859No Hit
GCTGCTGGCGTCCAAGATGTCGACCAAGAATTTCCGAGTCAGTGAC640.10176984114363859No Hit
ATTGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10176984114363859No Hit
ATCTGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10176984114363859No Hit
CACAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAA630.10017968737576924No Hit
AACAGGGGGGGGTCAAGGGTCACCGGCAAGATGGCGGCGGCGCTGA630.10017968737576924No Hit
GCTAATGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA630.10017968737576924No Hit
AGCCTTGGGGGATCCGGAAGAGCGCCCGACCTTCGAGTACTTGCAG630.10017968737576924No Hit
ATACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10017968737576924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)