FastQCFastQC Report
Sat 31 Dec 2022
SRR5843645.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843645.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59309
Sequences flagged as poor quality0
Sequence length46
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCACACCCTGAGTGCAGGAACTGGGGAGGGTCCTGCTGGTGGG940.15849196580620142No Hit
CGCAACGGGTAGTATAACAAGCACTGGTATTTTTGTACAAAAAAGA910.15343371157834393No Hit
GCAAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA780.13151460992429478No Hit
CGGTTCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA740.12477027095381812No Hit
TCACGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.12308418621119897No Hit
TTATGCGGGGTTTGGGAAGCGCTCTGCCCGGCGGACAGGATGGCGG730.12308418621119897No Hit
GCGCTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA730.12308418621119897No Hit
CAGCAGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTT720.12139810146857982No Hit
AAGCCGGGGAAGCAAAACCCGAGACCATTAATGATTCATCCGCACC720.12139810146857982No Hit
TAAATTGGGCATGCATATCACATAGTTAATCCAAGTCCATGACCAT700.11802593198334149No Hit
CAACCAGGGATGTCTGACAAACCCGATATGGCTGAGATCGAGAAAT690.11633984724072231No Hit
TAAATTGGGAGGCGTGATGACATAAATGTGGGGGAACCAGAGGACA690.11633984724072231No Hit
GAGCTTGGGAGAGACCATGGAAAAATACAAACGTGCTTTGGCAGAT690.11633984724072231No Hit
TCATCCGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTC680.11465376249810315No Hit
GCTATTGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT680.11465376249810315No Hit
CTGCCGGGACGTGGGTGGGGGAGCTGAGCGCTCAGACCCAGGGCTA670.112967677755484No Hit
CGTCCGGGGAACCTACACTAACCTAAACAGGTTGATAGGTCAAATT670.112967677755484No Hit
GTGTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.112967677755484No Hit
GCTCTCGGGGTCCCTGCAGGAGGCGGGTGTGTGAATAGCATATATT670.112967677755484No Hit
GTATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.112967677755484No Hit
CTACTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA670.112967677755484No Hit
TCTGCTAGAGGGCAGCCTACGGATGAGCACCGCTTTGGTAGCAATT670.112967677755484No Hit
ACTATTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA670.112967677755484No Hit
ATTCAAGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACATG670.112967677755484No Hit
GCGAATGGGTCAGAATCTCTGGGGCACCTGATAAGTATGAGTCCAG660.11128159301286482No Hit
TCCATTGGGGGCCTCGTGCTGTCCCTCTGGCCACTTCTCATGGTGG650.10959550827024567No Hit
CCACCAGGGATGGCCTACCCATTCCAACTTGGTCTACAAGACGCCA650.10959550827024567No Hit
GCTGCTGGCGTCCAAGATGTCGACCAAGAATTTCCGAGTCAGTGAC650.10959550827024567No Hit
TTCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA650.10959550827024567No Hit
CAAAACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10790942352762649No Hit
TACTATGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC640.10790942352762649No Hit
TACTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC640.10790942352762649No Hit
CACTCCGGGACTTCGACATATCAATAACGCAGTAACAACGTTAAGT640.10790942352762649No Hit
GTTTTTGGGGGGAATTCACACCGGCGCACGCCACAGGCGTCATACT640.10790942352762649No Hit
CCAATCGGGATAACTCTAGGATTTTAAAAAGAGAGGTAGACCAAAG640.10790942352762649No Hit
ATACTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA640.10790942352762649No Hit
GTGCTAGGGGCACTTGTTATTGCATCAATCATAATCCAAACTCCAT630.10622333878500734No Hit
CATCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA630.10622333878500734No Hit
TTCAGGGGATGTGGTGACACCCAAGCATAACATTTTGTTACTACTT630.10622333878500734No Hit
TTGACTGGGTCTGACAAATTAACTCATGCTTGAGGAAACCTTGTTT630.10622333878500734No Hit
CGTCTTGGGGGAGTGACAGCAGCGCTTCAGTCAGCCACCATCTGAA630.10622333878500734No Hit
CCCTGAGGGGGAATTCCTCCTCATGTGAGCGGATCACTATCTACAG630.10622333878500734No Hit
ACATATGGATGGAAGAGTTAGGCAAAGAACTGAAGGAATGGAAGAG630.10622333878500734No Hit
TTCTCTGGGACACAAAGCCTTGGACAGAGTTCCACAACAAGCCGAG630.10622333878500734No Hit
GAAAGCCCTAACTTAATGGACGGGAGGTATCCCAATAGGAGGTTTC630.10622333878500734No Hit
TGGCTTGGGAGAAATGAACCTGTGAAATACCAGCGTGAGCTGTGGA620.10453725404238817No Hit
AAGCACGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAG620.10453725404238817No Hit
TCATTAGGGGAGCGGAGAACAGGTAGCTGGTTTCGTGAAGGAGTGT620.10453725404238817No Hit
CCCCTCTCCCAAACTGCCAAGTGACTCACTGCCGCTTCCCCGACCC620.10453725404238817No Hit
ATCGCCGGGAAGATTATAGAATTACAATTTGGTTAAAATTCATCAT620.10453725404238817No Hit
GTCAAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10453725404238817No Hit
AGCATCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA620.10453725404238817No Hit
AACAGGGGGGGGTCAAGGGTCACCGGCAAGATGGCGGCGGCGCTGA620.10453725404238817No Hit
GCACCAGTGCAATTGCCCAGGATGCAGACCAGAACTACGACTATGC620.10453725404238817No Hit
AGATTTGGGGGGGACCACCTACCAGTGCAAACTTTGTAATCGGACC610.10285116929976901No Hit
TGACAGGGGATCAGAGACTGGTGGTGGAGCTGCTTATCAAAAACGA610.10285116929976901No Hit
GCTTAAGGGGGCGGGAGAAGCAGCACTCTAGCCGCCTGCAACCCCA610.10285116929976901No Hit
ATTGTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA610.10285116929976901No Hit
TGACTAGGGGAAGCAGAAGAGGACCAGTCTGAGGCCTCGGGGAAGA610.10285116929976901No Hit
AAAGCAGGGTTTTGCAGTGTACTCCAGGTTAGCTCTGAACTAGTCA610.10285116929976901No Hit
ATCCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC610.10285116929976901No Hit
TTATCAGGGATGAGCATCTTCACCATGAGGGCCAAGCCCAGGTTGC610.10285116929976901No Hit
ACATAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC600.10116508455714984No Hit
GTTTTAGGGATGCGCCGGAAGTGCACTGCGGCGAACGCGAGGAAGT600.10116508455714984No Hit
GTATCAGGGATACTTTGGTGTTTGGAGAGACGGACATTGTACCCAG600.10116508455714984No Hit
CACCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10116508455714984No Hit
TACCTTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC600.10116508455714984No Hit
TGCTCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA600.10116508455714984No Hit
GCTAATGGGGAGCCCACCACATATTCACAGTAGGATTAGATGTAGA600.10116508455714984No Hit
ACACAGGGGGATCTTGCTATGGGGCCAATGACCACATTATATTTGG600.10116508455714984No Hit
AGCCATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA600.10116508455714984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)