FastQCFastQC Report
Sat 31 Dec 2022
SRR5843644.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843644.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67709
Sequences flagged as poor quality0
Sequence length46
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATCGGGGAAGCACGGAATCAGAAGAAAGAAGCCAAGGAATTAG990.146213944970388No Hit
CGCATAGGGGGAAGGTAAATTGGTCTGTGGCACAGTGACATAAACC940.13882940229511587No Hit
CGTCACGGGGCAGGACAGTCTGTGATGTATGTATGACAGGGCAGGA920.135875585225007No Hit
AAACATGGGGGAAAATGGCCAAGTGAAACAGTTGTTGGTCATTGAA900.13292176815489817No Hit
ACAACTAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA820.12110649987446277No Hit
ACAAGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC820.12110649987446277No Hit
CCTGGAACTAGACTTACAGGTATTTGGGAGCCACTATATAGTAGCT820.12110649987446277No Hit
GCCTCCGGGCTGCAGCAGCTATTCTGCAACCACGTGACAACGAATT780.11519886573424507No Hit
CGTAACGGGGGCAAAGACACAGGGTGTCACAGGCCCAGCATGCTTC780.11519886573424507No Hit
CCGACAGGGGAGACACTGTGGTTTAATCTGGACCGACCCTGTGTGG780.11519886573424507No Hit
TATCACGGGGACAGAGGCTACTCTAATCTGCTTAAGAGAGATTTTG780.11519886573424507No Hit
AGTCGGCGGGAGGGAAAGACGACTAAAAGACAGGTCTCCTCACACC770.11372195719919066No Hit
GCCAGGGAGAGTCCAAGGACATGGCGCATCTGGAAGTGGGACTGCA770.11372195719919066No Hit
CTTACCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA760.11224504866413623No Hit
AGTTGGGAGAGAAGCCTTACCTGTGTGATAAGTGTGGGCGTGGCTT760.11224504866413623No Hit
CTGTTTGGGGAAAAAAACCTGAAATTACTCATTGATGAAAAACAAA750.1107681401290818No Hit
TCACACGGGGCAAGACGTGTAGGGTGGACAGTCCGCAGGGGTGTTC750.1107681401290818No Hit
ACAGTTGGGGTCTGGAAGAGAAAGAGACAGAACAAAGATGGAAGTG750.1107681401290818No Hit
TAGTGCGGGGGCTTTTGAGCGGCGGCGGCCCGAGCTAGTGCGTCCG750.1107681401290818No Hit
GGCTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA750.1107681401290818No Hit
CTCCTTGGGTCCGGATTGAGGGACTACTCTTGCGCTTTTTCCGCTT740.10929123159402739No Hit
CTTTGCGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA740.10929123159402739No Hit
TTGCATGGGCTCTTCGTTGTTCGTCGACTTCTAGTGTGGAGACGAA740.10929123159402739No Hit
TAAACAGGGATTGTGTTTATATCAAACACAAATGAAGTAAGCAAGT730.10781432305897296No Hit
GCAAGTGGGCACACTAACCTCGGTGGAAAAATAACCATTCCCTGCC730.10781432305897296No Hit
CTATGGGGGGACGCTTGTCACCAGATTTCGTGGAGGAGCTGAGGAC720.10633741452391854No Hit
ATACGTGGGGGCTGCCGATGTGGTGTCTACTGACTGCAGTTCCAGT710.10486050598886411No Hit
ATCTCGGGGTCAAGGACCTGGTGGTGCTGCTGTTTGAAACTGCTCT710.10486050598886411No Hit
ATCTAGGGAGAGAAAGGCGGCAGCTGAGCTGCTCCAGTCTCAGGGC710.10486050598886411No Hit
TATCGCGGGGGTTTTCTGAACCTCTTGCTGCACCTCGTCACCAGTA710.10486050598886411No Hit
ACTATGGGGATGTTATCTCCAATCTGGTTGACAAACACCTTATATG710.10486050598886411No Hit
CATCTAGGGCTTGACAAGGGATCTCTGAAGACTGACTTTGCTCGTA710.10486050598886411No Hit
TAAACCGGGGGCCCACAACAGTCAGACCTCGCCAGCCAGCCGCCAG710.10486050598886411No Hit
TACATGGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA700.10338359745380968No Hit
GAAACGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA700.10338359745380968No Hit
CAACCTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA700.10338359745380968No Hit
AATTTTGGGGATCTTTAGTCGGGGGGAATTCTGGACATTAATTAGG690.10190668891875528No Hit
TGGGCCGGGGAAGCAAGATGGCGAGCGCGCGGAACGAAAATCTGTG690.10190668891875528No Hit
GACTATGGGGTCTGACATTGGCGTCTTTGCTAAGGGTCACATTGAA690.10190668891875528No Hit
TAGCTAGGGGTGGGGAGGTTTTACATAAAGGGTAACTCATGGTAGA690.10190668891875528No Hit
CCGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA680.10042978038370083No Hit
AAGAAGGGGAGGGTGGGCCGAGCAAGCCCAGCTAGGTATGGCGATG680.10042978038370083No Hit
CACGCCGGGAGGGTGGGCCGAGCAAGCCCAGCTAGGTATGGCGATG680.10042978038370083No Hit
GATGCAGGGGAGGCAACGCTGTGGGGATCGGGCTTCCACTCCAGCG680.10042978038370083No Hit
CATATAGGGAGGAACATCCTCGTGTTAGATATTGAGGCTGCTTCGT680.10042978038370083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)