FastQCFastQC Report
Sat 31 Dec 2022
SRR5843640.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843640.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66463
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1090.16400102312564885No Hit
TGTTTCGGGGGGAGAGGGGCTGAGGGATGGACTTCAGCCCCTCTGC950.1429366715315288No Hit
ACTCAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA800.12036772339497163No Hit
AAAAAGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT760.11434933722522306No Hit
AAACAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT750.11284474068278591No Hit
ATTTAAGGGGGTGAGACAGCTTTCAAAAACATGACGATTCCTTATG750.11284474068278591No Hit
CATTACGGGCCCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTC740.11134014414034878No Hit
CCGTTTGGGAGAGACGACTCAAAACGACCTGCAAGCATGCTGCAGT730.10983554759791163No Hit
TTGGAAGGGAACTAAATGTACTAACCTTTTTCCCTCCTAATTTGCT730.10983554759791163No Hit
TTATATGGGGGTCCCTACTGAGTTTTGACAGAATTTGGAAGCTGCA720.10833095105547447No Hit
ATTTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA720.10833095105547447No Hit
GCATATGGGGTTGGAGCCTTGCTGCTGTGAAACGCTGTAGTCACCA710.10682635451303732No Hit
TCTTAGGGGGAAAATGGAAGGAGAAAGTACCCACAGAGTATGCTAG710.10682635451303732No Hit
ATCTTTGGGGTGGAAGCTTTCGCTGCTGCCTTCTGCATCGTAGGCT710.10682635451303732No Hit
CTGTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA710.10682635451303732No Hit
GCGGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC710.10682635451303732No Hit
CACACTAGGGGCTTGCGGTGGTTTGAGTGGTGGCAAGTCCAGTGCT700.10532175797060019No Hit
CTGCATGGGGGGGAGACCAAAAGCTCATACTCCTAACCCTAGGAAA690.10381716142816304No Hit
ACAATTGGGGCAACAGCGGTTCCACAGATACTTCCTCTGTCATCAA680.10231256488572589No Hit
CTTTCAGGGGACGAGTTAGTGTGCGTGCGGTGCTTTTCCAGACTAG680.10231256488572589No Hit
TGGATAGGGGGGAATTCTGGACACTAATTAGGGCTGAAAGCCCTAA680.10231256488572589No Hit
ATACCAGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC670.10080796834328874No Hit
AAAAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA670.10080796834328874No Hit
TGGCCAGGGCTAGCTCTAGACACCAGCTGGAGACAACTCTGGTACA670.10080796834328874No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)