FastQCFastQC Report
Sat 31 Dec 2022
SRR5843639.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843639.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63429
Sequences flagged as poor quality0
Sequence length46
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTCAGGGATTGAGACTGTGGTGTGTCTGCAGGATAGTGTGCTGG900.14189093316937046No Hit
CCAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA880.13873780132116223No Hit
CATTACGGGCCCTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTC870.13716123539705813No Hit
AACTTCGGGGAACTCACAGAGATCCACGTGCCTTTGTCTCCCAGGT850.1340081035488499No Hit
TGTTTCGGGGGGAGAGGGGCTGAGGGATGGACTTCAGCCCCTCTGC760.11981901023191284No Hit
AAACAGGGGGGAATTCCTCTGTGTCATGATCGTGAGTTGTCGCAGT720.11351274653549638No Hit
CAAGCGGGGTAGCAATAGAGAGAAATGCAGCTTTTATTTGTAAGTT720.11351274653549638No Hit
CAATAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAACCCCTAA690.10878304876318404No Hit
CACACTAGAGCGACACCAACATCGTTACGCTTACACACCGGACGCT690.10878304876318404No Hit
CCCAGATGCGAGGTGGAAAAGTCACACTAGAGCGACACCAACATCG680.10720648283907991No Hit
ACACGCGGGGACACAGAGTGCTTGGAGATGTGCTCAGGGCTGCTCA660.10405335099087168No Hit
CCGCTGGGGAGAAGAGGACGATCCAGTGCCTGAGATCCGCAGAGAT660.10405335099087168No Hit
GACAGGGCCTACAGAAGCAACTGGGAAGTTTTCCATCCAATTATCT660.10405335099087168No Hit
ATTTAAGGGGGTGAGACAGCTTTCAAAAACATGACGATTCCTTATG660.10405335099087168No Hit
CGGTCTGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC650.10247678506676756No Hit
GAATGAGGGATCCCGGGCGGCGCGAACGGCCCAGCCATGTCCGCAG640.10090021914266345No Hit
CCAAAAGGGGTGTACCACATACAAAAATCAGTGTGTGTGTTACCTG640.10090021914266345No Hit
CGTTGCGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC640.10090021914266345No Hit
GCGGCTGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC640.10090021914266345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)