FastQCFastQC Report
Sat 31 Dec 2022
SRR5843630.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843630.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83475
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCGGGATTCGCTTGACTCACGCCTTCGCCGTAGCATCTTTCG1640.19646600778676251No Hit
TTGTAGGGAGAGTGTGTGGACTGACTGGGTAGTGTTGTAAGAAAAG1020.12219227313566935No Hit
TCTTCGGGGGTTTCTTTGCTTCTGGGATTCCTCTTTCTGCCTTCCA1010.12099430967355494No Hit
CGTAGAGGGAGACAAACACACAGTTGTTAGTTTTCAGACATTCGCT1000.11979634621144056No Hit
GCTACCGGGAAGCTACTCTTATTCTACTTCTGGCTTCTACCTAGGG960.11500449236298294No Hit
CCTCAGGGATTTCCAAAAATGGCCGATTAGCTTTGTTAAATGTAGC960.11500449236298294No Hit
CTTGGGGGGCCAAGCCCAGGTTGCTTCTATTTGCTTCACCTTTAAC950.11380652890086852No Hit
ACCATAGGGGGCAGTGCCCATTGGTACACACTAACCTCGGTGGAAA940.11260856543875411No Hit
ATCATAGGGATCTCCTAACCTTTGATGACTCTGTACTTTGTTTTTG930.11141060197663973No Hit
AACCCCGGGTGGCAGGGATAAGCAACAGGAAGTAGTGAAATCCCTT920.11021263851452531No Hit
CTCCGAGGGGTTGTCTGGAGGAGAAACCTGGGGACAGGGGCAAGCT920.11021263851452531No Hit
GCCGATGGGTGAGACAAATGCTTAGGATTTGCCCAGCCTGGCTTTG910.1090146750524109No Hit
ATCTATGGGTCTTTATGCAGATCCTCACTGCCTGGATTTCTTGCCA890.10661874812818209No Hit
TTCATCGGGACCTCTTGTAGACAGGACAAATTGTAGGTCAAAGGTT890.10661874812818209No Hit
ATCTTTGGGATGTGGCCCTGGTTGGTTGGTTTTGAACTCAGAAATG890.10661874812818209No Hit
TAGTCAGGGAATGCTTCAGATGCCCTGGACAGGATTCGATATGAGA870.10422282120395326No Hit
TATTGTGGGTGCCACTCAAGGCTGCCTGCAGAACACGGTGAATGAC860.10302485774183888No Hit
AAGTCAGGGACGCTGACTTTGGTGGACACAGGCATTGGCATGACCA860.10302485774183888No Hit
CAACATGGGGAGACAGCAGCGCTATGGGCACCTCTGTGTCAACGAC850.10182689427972447No Hit
ATCTGTGGGGATACAGAGCCCAAACCTATGATTATTGGCACCAACA850.10182689427972447No Hit
CTATGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA850.10182689427972447No Hit
GATAGTGGGATTGAATCCACTAACATTTGCTGAGCACTGTAGCTGT850.10182689427972447No Hit
TATTGTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA850.10182689427972447No Hit
CGTGCAGGGACATCCGTTCCTGCCGCGTTCTGATGCTTTCTGATTG850.10182689427972447No Hit
CCATCCGGGTATGAGCAGCAGTCGGCTATGATTTGCAATGCTTGCA850.10182689427972447No Hit
TGTCGAGGGGGTTCTGCACCAACTCAGAGTCTTGTTGGAGCTTTAT840.10062893081761005No Hit
AACGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA840.10062893081761005No Hit
CAGTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA840.10062893081761005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)