FastQCFastQC Report
Sat 31 Dec 2022
SRR5843629.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843629.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79092
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCGGGATTCGCTTGACTCACGCCTTCGCCGTAGCATCTTTCG1550.1959743084003439No Hit
TATTGTGGGTGCCACTCAAGGCTGCCTGCAGAACACGGTGAATGAC1040.13149243918474687No Hit
TCTTCGGGGGTTTCTTTGCTTCTGGGATTCCTCTTTCTGCCTTCCA980.12390633692408841No Hit
TTGTAGGGAGAGTGTGTGGACTGACTGGGTAGTGTTGTAAGAAAAG920.11632023466342993No Hit
CGTGCTGGGGGCAAGCATTCTGTGATTTGAGAAACAAACTTCAGTG920.11632023466342993No Hit
CATAATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA910.11505588428665352No Hit
ACGGCTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA910.11505588428665352No Hit
TGCCGGGGGATCTAGCTGTGGGGGGAATTCTGGACATTAATTAGGG880.11126283315632428No Hit
AAACAGGGGCTTATCCCCAGGGGCCAGGTAGGAAATGGGAGGTTGG870.10999848277954787No Hit
ATCTTTGGGATGTGGCCCTGGTTGGTTGGTTTTGAACTCAGAAATG870.10999848277954787No Hit
ACCATAGGGGGCAGTGCCCATTGGTACACACTAACCTCGGTGGAAA860.10873413240277145No Hit
CAGTTTGGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTA860.10873413240277145No Hit
CCTCATGGGGACAATGCTGCGGTGACATTGAGCTTCGGTGGCCGGC850.10746978202599504No Hit
ACAGTTGGGGAGGCACAGATGAGCATCCTACTGTCGCCGCCGTCGC850.10746978202599504No Hit
CTTGGGGGGCCAAGCCCAGGTTGCTTCTATTTGCTTCACCTTTAAC850.10746978202599504No Hit
AAGTCAGGGACGCTGACTTTGGTGGACACAGGCATTGGCATGACCA850.10746978202599504No Hit
CTTATAGGGGGAATTCGAGCTCTTGATGATGATACTTAACCAAACC840.10620543164921864No Hit
TGCACTGGGAATGAATACTTGACCAAGTATTTGCATTTATCAGTGG830.10494108127244223No Hit
TCTTCAGGGACTGGGAATGTGGGCCCCACTGGGGGGAGCGGAGGGA820.10367673089566581No Hit
GCTTGTGGGGACAGCCAGGCAGCTGCTCTTCTAGCTTCTGATTATC820.10367673089566581No Hit
CCACATGGGCTGCTGCATGAGCTGATATTGAAGTATCAATTTGCCC820.10367673089566581No Hit
GTTTCTGGGGTTGTGACTATGATTCACCAACAAAAATGTTCTTTTA810.10241238051888939No Hit
AACCTTGGGAAGCACTTCTCTCCGGAGGAACTCAAAGTCAAGGTTC810.10241238051888939No Hit
CCATATGGGGTCCTGGATAACACCGAAGGAAAGAACCCTGCCGAAT810.10241238051888939No Hit
CGTTACGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA800.10114803014211297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)