FastQCFastQC Report
Sat 31 Dec 2022
SRR5843628.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843628.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100741
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1490.14790403112933165No Hit
CGTCGCGGGCACACTCTTTGCTCCTCAGTTGAAAATTTGCATCCCT1430.14194816410398944No Hit
CTTGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1360.13499965257442353No Hit
CTACTTGGGGAGATGAACCAGAGGAGAGGCAGATGTCACGGACACG1170.11613940699417317No Hit
GCAACTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1090.10819825096038355No Hit
CTTTTTGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT1070.10621296195193616No Hit
CATAGCGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC1050.10422767294348875No Hit
CACCGAGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACAT1040.10323502843926505No Hit
TAAGTAGGGGCTTTCTCCGGCGGCCGGGAAGATGGCGGACATTCAG1030.10224238393504133No Hit
CAGCTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1030.10224238393504133No Hit
TATCCTGGGACCTAGGGATTTAGCTAAAAGGAACACTGCATCTTTA1020.10124973943081764No Hit
CTTTCAGGGATGGAAAGCCACGCAGACCATGGCAGCGCATGAGGAG1020.10124973943081764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)