FastQCFastQC Report
Sat 31 Dec 2022
SRR5843627.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843627.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96399
Sequences flagged as poor quality0
Sequence length46
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1380.14315501198145208No Hit
CGTCGCGGGCACACTCTTTGCTCCTCAGTTGAAAATTTGCATCCCT1240.1286320397514497No Hit
CTTGAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1220.12655732943287792No Hit
AATCAGGGGGATTCAAAGCAGCGGATGCTGAGCCTTGGTCTGGCTG1150.11929584331787674No Hit
CTCTCAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA1100.11410906752144731No Hit
TATCCTGGGACCTAGGGATTTAGCTAAAAGGAACACTGCATCTTTA1030.10684758140644612No Hit
ACATTTGGGGGCAGGGGTGCTTCTGTTCAGCCTGAGCTCAGTCGTC1020.10581022624716024No Hit
AACCATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAAC1020.10581022624716024No Hit
AGCGATGGGGGAAACCGAAACTGCCGCAGAAAGGGCAGACCCGCAG1010.10477287108787436No Hit
CTATCGGGGGTGGGGACATGTGTGTCTGAGGGAAGCTACCCTGCAG990.10269816076930258No Hit
GCCTGCGGGTTGCATTGTTAACACACAATCCTTCACTTTTAAGGAA980.10166080561001671No Hit
GCACTCGGAGGCATCTTTATGATCCCAAGATGCAGACGGACAAACC980.10166080561001671No Hit
GCAGCTGGGGGGGAATTCCAATGATAGGCTAGTCTCGCGCAGTACA970.10062345045073083No Hit
CCTCCAGGGGCCTTTTTTACAGTGACAACAGACAGTCCCTCGGTTT970.10062345045073083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)