FastQCFastQC Report
Sat 31 Dec 2022
SRR5843606.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843606.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46849
Sequences flagged as poor quality0
Sequence length46
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATAGGGATGACCCACCAAACTCATGCATATCACATAGTTAATC670.14301265768746396No Hit
CTCTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA560.11953296761937288No Hit
CTCATACAGGGGTCTCAAAAAGGAGCCATGTGCTGCCCCGTGAGGG540.11526393306153815No Hit
TGTCTTGGGTTTTTGCCTGACTCTGGAAAAATGCTGAAGAGAAGGA520.11099489850370338No Hit
CACATAGGGACTTCTGTGGCGGTGTACAAAAGTGGAGTTTTTGTTT510.10886038122478602No Hit
ATGTTGGGGGCAGAAGGGCTCAACAATGACTTCATCTTCCATGGCT490.10459134666695126No Hit
CTGACTGGGACTCTAAGAATACAAACTAGGTTATATGTTGTCCACT490.10459134666695126No Hit
ATACCAGGGGGGATTAGAAATGAATGAGGAGCAAGGGCTGGTTTGT490.10459134666695126No Hit
ATGCATGGGGAGAAACTTCAAGGCAAGATCAATGATGAGGACAAAC490.10459134666695126No Hit
TAGCTAGGGATCCTCTTTCCCAGTTTCCCCTCTGCAAATCCCCAAT480.1024568293880339No Hit
CTTACCGGGAGCCCCTGCCCATCCAAAGCTGGGCACACGCCTCAGA470.10032231210911652No Hit
CTTTATGGGATGTTGGGTCTGTTATTATGATATTTTTTACATGAAA470.10032231210911652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)