FastQCFastQC Report
Sat 31 Dec 2022
SRR5843605.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843605.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44687
Sequences flagged as poor quality0
Sequence length46
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGATAGGGACCTCCAGTAGCTGCACAAGGGCCCTGCTTGGCTCAT530.1186027256249021No Hit
TGCTAAGGGAATGCAAGGTGAGAGTAGGTTCTTAAGTGGAGATTCT510.114127151073019No Hit
CTTTATGGGATGTTGGGTCTGTTATTATGATATTTTTTACATGAAA510.114127151073019No Hit
CTTACCGGGAGCCCCTGCCCATCCAAAGCTGGGCACACGCCTCAGA500.11188936379707745No Hit
ACATTGGGGGGAGAAAAAGCTGACCGAGATGGAGGCGGATGGACAG490.10965157652113591No Hit
AGGCTAGGGAGATGAGAAGCTTTTCAAAACCATGATACCCAGATCC470.10517600196925281No Hit
TCTTTAGGGGCCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGA450.10070042741736972No Hit
CCTACCGGCAGCTGTAGCGGCCCGGCAGGAGACAGACTCCATCCCG450.10070042741736972No Hit
TTCAGGGATTGTGACTACTGTGATACGTATCTTACCCACGATTCTC450.10070042741736972No Hit
TTCCGCGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA450.10070042741736972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)