FastQCFastQC Report
Sat 31 Dec 2022
SRR5843596.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843596.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47695
Sequences flagged as poor quality0
Sequence length46
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACCGGGTGTTTCACATTGGGTAGTATGCATTCTGTCTGCACTG650.13628262920641576No Hit
CGTTAAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA580.12160603836880177No Hit
TCGACTGGGATAGCTAAAGAAATTTTTGTGGTTTCTCTGCTTATGG570.11950938253485689No Hit
CTCGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAA540.11321941503302232No Hit
ACTTCAGGGAGGACCGCTTGTGCTTGGAGGCTGGACCGTTGGGGTT510.10692944753118774No Hit
TTGCCCGGGGTATAAGTTAAGATCATAGCTTTTAAACTCTTAAATA500.1048327916972429No Hit
ACCAACGGGGAGGAGATTGCCATGGCAACGGTCACAGCACTTCGTC500.1048327916972429No Hit
CAGCCAGGGATTTCCAAAGGGTCTTGGTGAAGAAATATGCGTCAGA490.10273613586329804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)